Jon Sporring

Jon Sporring

Professor


  1. 2024
  2. E-pub ahead of print

    Young glial progenitor cells competitively replace aged and diseased human glia in the adult chimeric mouse brain

    Vieira, R., Mariani, J. N., Huynh, N. P. T., Stephensen, Hans Jacob Teglbjærg, Solly, R., Tate, A., Schanz, S., Cotrupi, N., Mousaei, M., Sporring, Jon, Benraiss, A. & Goldman, Steven Alan, 2024, (E-pub ahead of print) I: Nature Biotechnology.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  3. 2023
  4. Udgivet

    Parametric Volumetric Registration

    Yushkevich, P. A., Zhang, M. & Sporring, Jon, 29 sep. 2023, Medical Image Analysis. Frangi, A., Prince, J. & Sonka, M. (red.). Academic Press, s. 331-354 24 s.

    Publikation: Bidrag til bog/antologi/rapportBidrag til bog/antologiForskningfagfællebedømt

  5. Udgivet

    A Practical Approach to Estimating the Effect of Synchrotron Radiation on Sperm Motility and Viability

    Lindhøj, M. B., Bonnin, A., Almstrup, K., Dyrby, T., Mokso, R. & Sporring, Jon, 2023, bioRxiv, 18 s.

    Publikation: Working paperPreprintForskning

  6. Udgivet

    Astrocytic engagement of the corticostriatal synaptic cleft is disrupted in a mouse model of Huntington’s disease

    Villanueva, C. B., Stephensen, Hans Jacob Teglbjærg, Mokso, R., Benraiss, A., Sporring, Jon & Goldman, Steven Alan, 2023, I: Proceedings of the National Academy of Sciences USA (PNAS). 120, 24, 11 s., e2210719120.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  7. Udgivet

    Morphology on Categorical Distributions

    Ørting, S. N., Stephensen, Hans Jacob Teglbjærg & Sporring, Jon, 2023, I: Journal of Mathematical Imaging and Vision. 65, s. 861–873

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  8. Udgivet

    Multi-scale and Multi-resolution

    Sporring, Jon, 2023, Medical Image Analysis. Frangi, A., Prince, J. & Sonka, M. (red.). Elsevier, 33 s.

    Publikation: Bidrag til bog/antologi/rapportBidrag til bog/antologiForskningfagfællebedømt

  9. Udgivet

    Multiscale and multiresolution analysis

    Sporring, Jon, 2023, Medical Image Analysis. Academic Press, s. 177-197

    Publikation: Bidrag til bog/antologi/rapportBidrag til bog/antologiForskningfagfællebedømt

  10. 2022
  11. Udgivet

    Extracting Mitochondrial Cristae Characteristics from 3D Focused Ion Beam Scanning Electron Microscopy Data

    Wang, Chenhao, Østergård, L., Hasselholt, S. & Sporring, Jon, 9 nov. 2022, bioRxiv. 20 s.

    Publikation: Bog/antologi/afhandling/rapportRapport

  12. Udgivet

    Reconstructing Binary Signals from Local Histograms

    Sporring, Jon & Darkner, Sune, 21 mar. 2022, I: Entropy. 24, 3, s. 1-11 433.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  13. Udgivet

    An algebra for local histograms

    Sporring, Jon & Darkner, Sune, 2022, I: Frontiers in Computer Science. 4, s. 1-9 939563.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  14. Udgivet

    Layer III pyramidal cells in the prefrontal cortex reveal morphological changes in subjects with depression, schizophrenia, and suicide

    Larsen, N. Y., Vihrs, N., Møller, J., Sporring, Jon, Tan, X., Li, X., Ji, G., Rajkowska, G., Sun, F. & Nyengaard, J. R., 2022, I: Translational Psychiatry. 12, 1, s. 363 1 s.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  15. 2021
  16. Udgivet

    Cellular 3D-reconstruction and analysis in the human cerebral cortex using automatic serial sections

    Larsen, N. Y., Li, X., Tan, X., Ji, G., Lin, J., Rajkowska, G., Møller, J., Vihrs, N., Sporring, Jon, Sun, F. & Nyengaard, J. R., dec. 2021, I: Communications Biology . 4, 1, 15 s., 1030.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  17. Udgivet

    Currents and K-functions for Fiber Point Processes

    Hansen, P. E. H., Waagepetersen, R. P., Svane, A. M., Sporring, Jon, Stephensen, Hans Jacob Teglbjærg, Hasselholt, S. & Sommer, Stefan Horst, 2021, arXiv preprint. 12 s.

    Publikation: Bog/antologi/afhandling/rapportRapport

  18. Udgivet

    Currents and K-functions for Fiber Point Processes

    Hansen, P. E. H., Waagepetersen, R. P., Svane, A. M., Sporring, Jon, Stephensen, Hans Jacob Teglbjærg, Hasselholt, S. & Sommer, Stefan Horst, 2021, Geometric Science of Information: 5th International Conference, GSI 2021, Paris, France, July 21–23, 2021, Proceedings. Nielsen, F. & Barbaresco, F. (red.). Springer, s. 127-134 (Lecture Notes in Computer Science, Bind 12829).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  19. Udgivet

    How Few Annotations are Needed for Segmentation Using a Multi-planar U-Net?

    Laprade, W. M., Perslev, M. & Sporring, Jon, 2021, Deep Generative Models, and Data Augmentation, Labelling, and Imperfections - First Workshop, DGM4MICCAI 2021, and First Workshop, DALI 2021, Held in Conjunction with MICCAI 2021, Proceedings. Engelhardt, S., Oksuz, I., Zhu, D., Yuan, Y., Mukhopadhyay, A., Heller, N., Huang, S. X., Nguyen, H., Sznitman, R. & Xue, Y. (red.). Springer, s. 209-216 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Bind 13003 LNCS).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  20. Udgivet

    Measuring Shape Relations Using r-Parallel Sets

    Stephensen, Hans Jacob Teglbjærg, Svane, A. M., Villanueva, C. B., Goldman, Steven Alan & Sporring, Jon, 2021, I: Journal of Mathematical Imaging and Vision. 63, s. 1069–1083 15 s.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  21. 2020
  22. Udgivet

    Morphology on categorical distributions

    Ørting, S. N., Stephensen, Hans Jacob Teglbjærg & Sporring, Jon, 14 dec. 2020, arXiv.org.

    Publikation: Bog/antologi/afhandling/rapportRapport

  23. Udgivet
  24. Udgivet

    A Novel Approach to Tongue Standardization and Feature Extraction

    Wang, Chenhao, Cattaneo, C., Liu, J., Bredie, Wender, Pagliarini, E. & Sporring, Jon, 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020: 23rd International Conference, Proceedings. Martel, A. L., Abolmaesumi, P., Stoyanov, D., Mateus, D., Zuluaga, M. A., Zhou, S. K., Racoceanu, D. & Joskowicz, L. (red.). Springer, s. 36-45 (Lecture Notes in Computer Science, Bind 12265 LNCS).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  25. Udgivet

    Comparison of manual and machine learning image processing approaches to determine fungiform papillae on the tongue

    Cattaneo, C., Liu, J., Wang, Chenhao, Pagliarini, E., Sporring, Jon & Bredie, Wender, 2020, bioRxiv, 18 s.

    Publikation: Working paperPreprintForskning

  26. Udgivet

    Comparison of manual and machine learning image processing approaches to determine fungiform papillae on the tongue

    Cattaneo, C., Liu, J., Wang, Chenhao, Pagliarini, E., Sporring, Jon & Bredie, Wender, 2020, I: Scientific Reports. 10, 15 s., 18694.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  27. Udgivet

    Restoring drifted electron microscope volumes using synaptic vesicles at sub-pixel accuracy

    Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 2020, I: Communications Biology. 3, 1, 7 s., ´81.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  28. 2019
  29. Udgivet

    Drift Corrector Software

    Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 20 aug. 2019

    Publikation: Bidrag der ikke har en tekstformSoftwareprogramForskning

  30. Udgivet

    Using a high-level parallel programming language for GPU-accelerated tomographic reconstruction

    Lindhøj, M. B., Henriksen, Troels, Pedersen, L. & Sporring, Jon, 15 jul. 2019, The 2019 International Conference on High Performance Computing & Simulation: HPCS 2019. IEEE, s. 27-32 6 s. 3

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  31. Udgivet

    Generalizations of Ripley’s K-function with Application to Space Curves

    Sporring, Jon, Waagepetersen, R. P. & Sommer, Stefan Horst, jun. 2019, Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Hong Kong, China, 2019, Proceedings: 26th International Conference, IPMI 2019, Hong Kong, China, June 2–7, 2019, Proceedings. Springer, s. 731-742 (Lecture Notes in Computer Science, Bind 11492).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  32. Udgivet

    Experimental cerebral malaria is associated with profound loss of both glycan and protein components of the endothelial glycocalyx

    Hempel, C., Sporring, Jon & Kurtzhals, Jørgen, 2019, I: F A S E B Journal. 33, 2, s. 2058-2071

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  33. Udgivet

    Muscle fibre morphology and microarchitecture in cerebral palsy patients obtained by 3D synchrotron X-ray computed tomography

    Borg, L., Sporring, Jon, Dam, Erik Bjørnager, Dahl, V. A., Dyrby, T. B., Feidenhans'l, Robert Krarup, Dahl, A. B. & Pingel, Jessica, 2019, I: Computers in Biology and Medicine. 107, s. 265-269 5 s.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  34. 2018
  35. Udgivet

    Collocation for diffeomorphic deformations in medical image registration

    Darkner, Sune, Pai, A. S. U., Liptrot, M. G. & Sporring, Jon, 2018, I: I E E E Transactions on Pattern Analysis and Machine Intelligence. 40, 7, s. 1570-1583

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  36. Udgivet

    Estimating the continuous entropy of a discrete set of orientations in R3

    Sporring, Jon, 2018, Copenhagen: Department of Computer Science, University of Copenhagen. 6 s. (Technical Report; Nr. 1, Bind 2018).

    Publikation: Bog/antologi/afhandling/rapportRapport

  37. 2017
  38. Udgivet

    Reduction of variable-truncation artifacts from beam occlusion during in situ x-ray tomography

    Borg, L., Jørgensen, J. S., Frikel, J. & Sporring, Jon, dec. 2017, I: Measurement Science and Technology. 28, 12, 19 s., 124004.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  39. Udgivet

    Synchrotron radiation μCT and histology evaluation of bone-to-implant contact

    Neldam, C. A., Sporring, Jon, Rack, A., Lauridsen, T., Hauge, E. M., Jørgensen, H. L., Jørgensen, Niklas Rye, Feidenhans'l, Robert Krarup & Pinholt, E. M., sep. 2017, I: Journal of Cranio-Maxillofacial Surgery. 45, 9, s. 1448-1457 10 s.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  40. Udgivet

    Towards characterizing and reducing artifacts caused by varying projection truncation

    Borg, L., Jørgensen, J. S. & Sporring, Jon, 24 feb. 2017, Department of Computer Science, University of Copenhagen. 42 s. (Datalogisk Institut. Københavns Universitet. Technical Reports; Nr. 1, Bind 2017).

    Publikation: Bog/antologi/afhandling/rapportRapport

  41. Udgivet

    3D analysis of synaptic vesicle density and distribution after acute foot-shock stress by using serial section transmission electron microscopy

    Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R., Wegener, G., Popoli, M. & Sporring, Jon, 2017, I: Journal of Microscopy. 265, 1, s. 101–110 10 s.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  42. Udgivet

    3D estimation of synaptic vesicle distributions in serial section transmission electron microscopy

    Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R., Wegener, G., Popoli, M. & Sporring, Jon, 2017, I: Journal of Microscopy. 265, 1, s. 101–110 1 s.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  43. Udgivet

    Estimation of sample spacing in stochastic processes

    Rønn-Nielsen, A., Sporring, Jon & Jensen, E. B. V., 2017, I: Image Analysis and Stereology. 36, 1, s. 43-49 7 s.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  44. Udgivet

    Reducing artifacts from varying projection truncations

    Borg, L., Jørgensen, J. S., Frikel, J., Quinto, E. T. & Sporring, Jon, 2017. 2 s.

    Publikation: KonferencebidragPaperForskningfagfællebedømt

  45. 2016
  46. Udgivet

    Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation

    Michalkiewicz, M. D., Pai, A. S. U., Leung, K. K., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L., Sporring, Jon & Nielsen, Mads, 2016, Medical imaging 2016: Image processing. Styner, M. A. & Angelini, E. D. (red.). SPIE - International Society for Optical Engineering, 6 s. 978406. (Progress in Biomedical Optics and Imaging).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  47. Udgivet

    Deformation-based atrophy computation by surface propagation and its application to Alzheimer’s disease

    Pai, A. S. U., Sporring, Jon, Darkner, Sune, Dam, Erik Bjørnager, Lillholm, Martin, Jørgensen, D., Oh, J., Chen, G., Suhy, J., Sørensen, L. & Nielsen, Mads, 2016, I: SPIE Journal of Medical Imaging. 3, 1, 11 s., 014005.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  48. Udgivet

    Kernel bundle diffeomorphic image registration using stationary velocity fields and Wendland basis functions

    Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2016, I: IEEE Transactions on Medical Imaging. 35, 6, s. 1369-1380 12 s.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  49. Udgivet

    Recovery of missing information in diffusion magnetic resonance imaging data

    Siddiqi, K., Piuze-Phaneuf, E. & Sporring, Jon, 2016, Patentnr. US 2016/0335786 A1, 17 nov. 2016

    Publikation: Patent

  50. 2015
  51. Udgivet

    Adaptive time-stepping in dieomorphic image registration with bounded inverse consistency error

    Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015) . INRIA, s. 35-47

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  52. Udgivet

    Adaptive time-stepping in diffeomorphic image registration with bounded inverse consistency error

    Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L. E. B. L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, The 18th International Conference on Medical Image Computing and Computer Assisted Intervention: proceedings. Technische Universität München , s. 35-47 13 s.

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  53. Udgivet

    Analysis of shape and spatial interaction of synaptic vesicles using data from focused ion beam scanning electron microscopy (FIB-SEM)

    Khanmohammadi, M., Waagepetersen, R. P. & Sporring, Jon, 2015, I: Frontiers in Neuroanatomy. 9, 11 s., 116.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  54. Udgivet

    Comparison of several computational pipelines for atrophy computation in longitudinal Alzheimers studies

    Pai, A. S. U., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L. E. B. L., Sporring, Jon & Nielsen, Mads, 2015. 1 s.

    Publikation: KonferencebidragKonferenceabstrakt til konferenceForskningfagfællebedømt

  55. Udgivet

    Connection forms for beating the heart

    Mensch, A., Piuze, E., Lehnert, L., Backermans, A. J., Sporring, Jon, Strijkers, G. J. & Siddiqi, K., 2015, Statistical Atlases and Computational Models of the Heart - Imaging and Modelling Challenges: 5th International Workshop, STACOM 2014, Held in Conjunction with MICCAI 2014, Boston, MA, USA, September 18, 2014, Revised Selected Papers. Camara, O., Mansi, T., Pop, M., Rhode, K., Sermesant, M. & Young, A. (red.). Springer, s. 83-92 10 s. (Lecture notes in computer science, Bind 8896).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  56. Udgivet

    Diffeomorphic image registration with automatic time-step adjustment

    Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI). IEEE, s. 1085-1088 4 s.

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  57. Udgivet

    Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel

    Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Medical Imaging 2015: Image Processing. SPIE - International Society for Optical Engineering, 7 s. (Proceedings of S P I E - International Society for Optical Engineering, Bind 9413).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  58. Udgivet

    Matematik på hjertet: bedre diagnosticering af hjertesygdomme

    Sporring, Jon, 2015, Naturen i computeren. Det Natur- og Biovidenskabelige Fakultet, Københavns Universitet, s. 12-13 2 s. (Temahæfte, Bind 2015).

    Publikation: Bidrag til bog/antologi/rapportBidrag til bog/antologiUndervisning

  59. Udgivet

    Maurer-cartan forms for fields on surfaces: application to heart fiber geometry

    Piuze, E., Sporring, Jon & Siddiqi, K., 2015, I: IEEE Transactions on Pattern Analysis and Machine Intelligence. 37, 12, s. 2492-2504 13 s.

    Publikation: Bidrag til tidsskriftTidsskriftartikelfagfællebedømt

  60. Udgivet

    Method of modelling and characterising heart fiber geometry, involves determining whether new fitting energy meets predetermined threshold when predetermined threshold is met iterative process is terminated

    Siddiqi, K., Piuze-Phaneuf, E., Sporring, Jon, Savadjiev, P., Strijkers, G. & Zucker, S., 2015, IPC nr. G06T-011/00, Patentnr. US2015332483-A1, 19 nov. 2015, Prioritetsdato 15 maj 2014, Prioritetsnr. US993600P

    Publikation: Patent

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