Sune Darkner
Lektor
Image Analysis, Computational Modelling and Geometry
Universitetsparken 1
2100 København Ø
- Udgivet
Auto-segmentation of Hip Joints Using MultiPlanar UNet with Transfer Learning
Xu, Peidi, nsv780, nsv780, Gholamalizadeh, T., Nielsen, Michael Bachmann, Erleben, Kenny & Darkner, Sune, 2022, Medical Image Learning with Limited and Noisy Data: First International Workshop, MILLanD 2022 Held in Conjunction with MICCAI 2022 Singapore, September 22, 2022 Proceedings. Zamzmi, G., Antani, S., Rajaraman, S., Xue, Z., Bagci, U. & Linguraru, M. G. (red.). Springer Science and Business Media Deutschland GmbH, s. 153-162 10 s. (Medical Image Learning with Limited and Noisy Data, Bind 13559).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
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A hybrid approach to full-scale reconstruction of renal arterial network
Xu, Peidi, von Holstein-Rathlou, Niels-Henrik, Søgaard, S. B., Gundlach, C., Sørensen, Charlotte Mehlin, Erleben, Kenny, Sosnovtseva, Olga & Darkner, Sune, 9 maj 2023, I: Scientific Reports. 13, 1, 15 s., 7569.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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Extremely Weakly-Supervised Blood Vessel Segmentation with Physiologically Based Synthesis and Domain Adaptation
Xu, Peidi, Lee, B., Sosnovtseva, Olga, Sørensen, Charlotte Mehlin, Erleben, Kenny & Darkner, Sune, 2023, Medical Image Learning with Limited and Noisy Data - 2nd International Workshop, MILLanD 2023, Held in Conjunction with MICCAI 2023, Proceedings. Xue, Z., Antani, S., Zamzmi, G., Yang, F., Rajaraman, S., Liang, Z., Huang, S. X. & Linguraru, M. G. (red.). Springer, s. 191-201 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Bind 14307 LNCS).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
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Deep-learning-based segmentation of individual tooth and bone with periodontal ligament interface details for simulation purposes
Xu, Peidi, Gholamalizadeh, T., nsv780, nsv780, Darkner, Sune & Erleben, Kenny, 2023, I: IEEE Access. 11, s. 102460-102470Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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Conforming contact manifolds for multibody simulations
Visseq, V., Bonde, U., Erleben, Kenny & Darkner, Sune, 2014. 2 s.Publikation: Konferencebidrag › Konferenceabstrakt til konference › Forskning
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Cine-MRI Simulation to Evaluate Tumor Tracking
Tascón-Vidarte, J. D., Wahlstedt, I., Jomier, J., Erleben, Kenny, Vogelius, Ivan R. & Darkner, Sune, 2021, Simulation and Synthesis in Medical Imaging - 6th International Workshop, SASHIMI 2021, Held in Conjunction with MICCAI 2021, Proceedings. Svoboda, D., Burgos, N., Wolterink, J. M. & Zhao, C. (red.). Springer, s. 131-141 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Bind 12965 LNCS).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Accuracy and consistency of intensity-based deformable image registration in 4DCT for tumor motion estimation in liver radiotherapy planning
Tascon-Vidarte, J. D., Stick, L. B., Josipovic, Mirjana, Risum, S., Jomier, J., Erleben, Kenny, Vogelius, Ivan R. & Darkner, Sune, jul. 2022, I: PLoS ONE. 17, 7 July, s. 1-15 e0271064.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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Hippocampal texture provides volume-independent information for Alzheimer's disease diagnosis
Sørensen, L., Pai, A. S. U., Darkner, Sune, Suhy, J., Oh, J., Chen, G., Igel, Christian & Nielsen, M., 2012, I: Alzheimer's & Dementia. 8, 4, Supplement, s. P162–P163 2 s.Publikation: Bidrag til tidsskrift › Konferenceabstrakt i tidsskrift › Forskning
- Udgivet
Hippocampal texture provides volume independent information for Alzheimer's diagnosis
Sørensen, L., Pai, A. S. U., Darkner, Sune, Suhy, J., Oh, J., Chen, G., Igel, Christian & Nielsen, Mads, 2012, I: Alzheimer's & Dementia. 8, 4, Supplement, s. 15 1 s., IC-P-013.Publikation: Bidrag til tidsskrift › Konferenceabstrakt i tidsskrift › Forskning › fagfællebedømt
- Udgivet
Hippocampal texture predicts one-year hippocampal atrophy in mild cognitively impaired subjects
Sørensen, L., Pai, A. S. U., Mysling, P., Darkner, Sune, Chen, G., Oh, J., Suhy, J., Igel, Christian & Nielsen, Mads, 2013. 1 s.Publikation: Konferencebidrag › Poster › Forskning › fagfællebedømt
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Restoring drifted electron microscope volumes using synaptic vesicles at sub-pixel accuracy
Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 2020, I: Communications Biology. 3, 1, 7 s., ´81.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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Drift Corrector Software
Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 20 aug. 2019Publikation: Bidrag der ikke har en tekstform › Softwareprogram › Forskning
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The minimal energetic requirement of sustained awareness after brain injury
Stender, J., Mortensen, K. N., Thibaut, A., Darkner, Sune, Laureys, S., Gjedde, Albert & Kupers, R., 6 jun. 2016, I: Current Biology. 26, 11, s. 1494-1499 6 s.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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An algebra for local histograms
Sporring, Jon & Darkner, Sune, 2022, I: Frontiers in Computer Science. 4, s. 1-9 939563.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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Reconstructing Binary Signals from Local Histograms
Sporring, Jon & Darkner, Sune, 21 mar. 2022, I: Entropy. 24, 3, s. 1-11 433.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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Jacobians for Lebesgue registration for a range of similarity measures
Sporring, Jon & Darkner, Sune, 2011, Department of Computer Science, University of Copenhagen. 8 s. (Koebenhavns Universitet. Datalogisk Institut. Rapport; Nr. 04/2011).Publikation: Bog/antologi/afhandling/rapport › Rapport › Forskning
- Udgivet
Estimating the thickness of ultra thin sections for electron microscopy by image statistics
Sporring, Jon, Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R. & Jensen, E. B. V., 2014, 2014 IEEE International Symposium on Biomedical Imaging. IEEE, s. 157-160 4 s.Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
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Higher-order momentum distributions and locally affine LDDMM registration
Sommer, Stefan Horst, Nielsen, Mads, Darkner, Sune & Pennec, X., 2013, I: S I A M Journal on Imaging Sciences. 6, 1, s. 341-367 27 s.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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RootPainter3D: Interactive-machine-learning enables rapid and accurate contouring for radiotherapy
Smith, Abraham George, Petersen, Jens, Terrones-Campos, C., Berthelsen, A. K., Forbes, N. J., Darkner, Sune, Specht, Lena & Vogelius, I. R., 2022, I: Medical Physics. 49, 1, s. 461-473Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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A framework for voxel-based assessment of biological effect after proton radiotherapy in pediatric brain cancer patients using multi-modal imaging
Skaarup, M., Lundemann, M. J., Darkner, Sune, Jorgensen, M., Marner, Lisbeth, Mirkovic, D., Grosshans, D., Peeler, C., Mohan, R., Vogelius, Ivan R. & Appelt, A., 10 jun. 2021, I: Medical Physics. 48, 7, 12 s., 4110-4121.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
- Udgivet
Brain Segmentation in Rodent MR-Images Using Convolutional Neural Networks
Sigurdsson, B., Darkner, Sune, Sommer, Stefan Horst, Mortensen, K. N., Sanggaard, S., Kostrikov, S. & Nedergaard, Maiken, 2018.Publikation: Konferencebidrag › Konferenceabstrakt til konference › Forskning › fagfællebedømt
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Global Position Prediction for Interactive Motion Capture
Schreiner, Paul, Perepichka, M., Lewis, H., Darkner, Sune, Kry, P. G., Erleben, Kenny & Zordan, V. B., 2021, I: Proceedings of the ACM on Computer Graphics and Interactive Techniques. 4, 3, s. 1-16 3479985.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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Automatic FDG-PET-based tumor and metastatic lymph node segmentation in cervical cancer
Rodríguez Arbonès, D., Jensen, H. G., Loft, A., af Rosenschöld, P. M., Hansen, A. E., Igel, Christian & Darkner, Sune, 2014, Medical Imaging 2014: Image Processing. Ourselin, S. & Styner, M. A. (red.). SPIE - International Society for Optical Engineering, 8 s. 903441. (Progress in Biomedical Optics and Imaging; Nr. 35, Bind 15).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
U-Sleep: resilient high-frequency sleep staging
Perslev, Mathias, Darkner, Sune, Kempfner, L., Nikolic, M., Jennum, Poul & Igel, Christian, 15 apr. 2021, I: npj Digital Medicine. 4, 1, 12 s., 72.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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U-Time: A Fully Convolutional Network for Time Series Segmentation Applied to Sleep Staging
Perslev, Mathias, Hejselbak Jensen, M., Darkner, Sune, Jørgen Jennum, P. & Igel, Christian, 1 okt. 2019, Advances in Neural Information Processing Systems 32 (NIPS 2019). NIPS Proceedings, Bind 32. s. 4415-4426Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Localized cerebral atrophy acceleration during Alzheimer’s disease
Pai, A. S. U., Sørensen, L., Darkner, Sune, Lillholm, Martin, Dam, E. B., Sporring, Jon & Nielsen, Mads, 2013, I: Alzheimer's & Dementia. 9, 4, Supplement, s. P36–P37 2 s., IC-P-059.Publikation: Bidrag til tidsskrift › Konferenceabstrakt i tidsskrift › Forskning › fagfællebedømt
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White matter hypointensity growth rate correlates with rate of brain atrophy
Pai, A. S. U., Sørensen, L., Darkner, Sune, Sporring, Jon, Rostrup, E. & Nielsen, Mads, 2014, I: Alzheimer's & Dementia. 10, 4, Supplement, s. P414 1 s., P1-285.Publikation: Bidrag til tidsskrift › Konferenceabstrakt i tidsskrift › Forskning › fagfællebedømt
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Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel
Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Medical Imaging 2015: Image Processing. SPIE - International Society for Optical Engineering, 7 s. (Proceedings of S P I E - International Society for Optical Engineering, Bind 9413).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
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Diffeomorphic image registration with automatic time-step adjustment
Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI). IEEE, s. 1085-1088 4 s.Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
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Comparison of several computational pipelines for atrophy computation in longitudinal Alzheimers studies
Pai, A. S. U., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L. E. B. L., Sporring, Jon & Nielsen, Mads, 2015. 1 s.Publikation: Konferencebidrag › Konferenceabstrakt til konference › Forskning › fagfællebedømt
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Evaluation of bias in brain atrophy estimation
Pai, A. S. U., Darkner, Sune, Sørensen, L., Erleben, L. L., Mysling, P., Sporring, Jon, Dam, E. & Nielsen, Mads, 2012, NIBAD '12: MICCAI 2012 Workshop on Novel Imaging Biomarkers for Alzheimer’s Disease and Related Disorders. Wang, L., Yushkevich, P. & Ourselin, S. (red.). MICCAI , s. 198-206 9 s.Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Localized cerebral atrophy acceleration during Alzheimer’s disease
Pai, A. S. U., Sørensen, L., Darkner, Sune, Lillholm, Martin, Dam, E. B., Sporring, Jon & Nielsen, Mads, 2013, I: Alzheimer's & Dementia. 9, 4, Supplement, s. P151 1 s., O1-10-06.Publikation: Bidrag til tidsskrift › Konferenceabstrakt i tidsskrift › Forskning › fagfællebedømt
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Hippocampal texture predicts rate of cognitive decline in mild cognitive impairment
Pai, A. S. U., Pillai, J. A., Sørensen, L., Darkner, Sune, Sommer, Stefan Horst & Nielsen, Mads, jul. 2017, I: Alzheimer's & Dementia. 13, 7, supplement, s. P1356 1 s., P4-225.Publikation: Bidrag til tidsskrift › Konferenceabstrakt i tidsskrift › Forskning
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Kernel bundle diffeomorphic image registration using stationary velocity fields and Wendland basis functions
Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2016, I: IEEE Transactions on Medical Imaging. 35, 6, s. 1369-1380 12 s.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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White matter hypointensity growth rate correlates with rate of brain atrophy
Pai, A. S. U., Sørensen, L., Darkner, Sune, Sporring, Jon, Rostrup, E. & Nielsen, Mads, 2014, I: Alzheimer's & Dementia. 10, 4, Supplement, s. P75-P76 2 s., IC-P-131.Publikation: Bidrag til tidsskrift › Konferenceabstrakt i tidsskrift › Forskning › fagfællebedømt
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Stepwise inverse consistent Euler’s scheme for diffeomorphic image registration
Pai, A. S. U., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L., Sporring, Jon & Nielsen, Mads, 2014, Biomedical Image Registration: 6th International Workshop, WBIR 2014, London, UK, July 7-8, 2014. Proceedings. Ourselin, S. & Modat, M. (red.). Springer, s. 223-230 8 s. (Lecture notes in computer science, Bind 8545).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
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Cube propagation for focal brain atrophy estimation
Pai, A. S. U., Sørensen, L., Darkner, Sune, Mysling, P., Jørgensen, D. R., Dam, E. B., Lillholm, Martin, Oh, J., Chen, G., Suhy, J., Sporring, Jon & Nielsen, Mads, 2013, 2013 IEEE 10th International Symposium on Biomedical Imaging. IEEE, s. 402-405 4 s.Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
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Deformation-based atrophy computation by surface propagation and its application to Alzheimer’s disease
Pai, A. S. U., Sporring, Jon, Darkner, Sune, Dam, Erik Bjørnager, Lillholm, Martin, Jørgensen, D., Oh, J., Chen, G., Suhy, J., Sørensen, L. & Nielsen, Mads, 2016, I: SPIE Journal of Medical Imaging. 3, 1, 11 s., 014005.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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A statistical model for simultaneous template estimation, bias correction, and registration of 3D brain images
Pai, A. S. U., Sommer, Stefan Horst, Raket, L. L., Kühnel, L., Darkner, Sune, Sørensen, L. & Nielsen, Mads, 2017, Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging: MICCAI 2016 International Workshops, MCV and BAMBI, Athens, Greece, October 21, 2016, Revised Selected Papers. Müller, H., Kelm, B. M., Arbel, T., Cai, W., Cardoso, M. J., Langs, G., Menze, B., Metaxas, D., Montillo, A., Wells, W. M., Zhang, S., Chung, A. C. S., Jenkinson, M. & Ribbens, A. (red.). Springer, s. 151-159 9 s. (Lecture notes in computer science, Bind 10081).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Adaptive time-stepping in dieomorphic image registration with bounded inverse consistency error
Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015) . INRIA, s. 35-47Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Adaptive time-stepping in diffeomorphic image registration with bounded inverse consistency error
Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L. E. B. L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, The 18th International Conference on Medical Image Computing and Computer Assisted Intervention: proceedings. Technische Universität München , s. 35-47 13 s.Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
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TopAwaRe: Topology-Aware Registration
Nielsen, R. K., Darkner, Sune & Feragen, A., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (red.). Springer VS, s. 364-372 9 s. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Bind 11765 LNCS).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
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The cartilage bone junction and its implications for deep canal hearing instrument fittings
Nielsen, C. & Darkner, Sune, 2011, I: Hearing Journal. 64, 3, s. 35-42 4 s.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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Deep Learning-Assisted Localisation of Nanoparticles in synthetically generated two-photon microscopy images
Netterstrøm, R., Kutuzov, Nikolay, Darkner, Sune, Pallesen, M. J., Lauritzen, Martin, Erleben, Kenny & Lauze, Francois Bernard, 2023, arXiv.org, 1 s.Publikation: Working paper › Preprint › Forskning
- Udgivet
Automatic measurement of wrist synovitis from contrast-enhanced MRI: a registration-centered approach
Mysling, P., Darkner, Sune, Sporring, Jon, Dam, E. & Lillholm, Martin, 2013, Medical Imaging 2013: Image Processing. Ourselin, S. & Haynor, D. R. (red.). SPIE - International Society for Optical Engineering, 6 s. 86692U. (Progress in Biomedical Optics and Imaging; Nr. 36, Bind 14).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
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A Direct Geometry Processing Cartilage Generation Method Using Segmented Bone Models from Datasets with Poor Cartilage Visibility
nsv780, nsv780, Nielsen, M. K., Tascon Vidarte, J. D., Darkner, Sune & Erleben, Kenny, 2022, Computational Biomechanics for Medicine: Towards Translation and Better Patient Outcomes. Springer, s. 155.169Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
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LibHip: An open-access hip joint model repository suitable for finite element method simulation
nsv780, nsv780, Gholamalizadeh, T., Ferguson, Z., Schneider, T., Nielsen, Michael Bachmann, Panozzo, D., Darkner, Sune & Erleben, Kenny, 2022, I: Computer Methods and Programs in Biomedicine. 226, 14 s., 107140.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation
Michalkiewicz, M. D., Pai, A. S. U., Leung, K. K., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L., Sporring, Jon & Nielsen, Mads, 2016, Medical imaging 2016: Image processing. Styner, M. A. & Angelini, E. D. (red.). SPIE - International Society for Optical Engineering, 6 s. 978406. (Progress in Biomedical Optics and Imaging).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
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Fast Vortex Particle Method for Fluid-Character Interaction
Meldgaard, A., Darkner, Sune & Erleben, Kenny, 2022, I: OpenReview.net. 2022, 7 s.Publikation: Bidrag til tidsskrift › Konferenceartikel › Forskning
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Locally orderless registration
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Jet-based local image descriptors
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FDG-PET template MNI152 1mm
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