Sune Darkner

Sune Darkner

Lektor

  • Image Analysis, Computational Modelling and Geometry

    Universitetsparken 5, 2100 København Ø

    Telefon: +45 35 33 57 02Mobil: +45 21 30 85 84

  1. Udgivet

    3D analysis of synaptic vesicle density and distribution after acute foot-shock stress by using serial section transmission electron microscopy. / Khanmohammadi, Mahdieh; Darkner, Sune; Nava, Nicoletta; Nyengaard, J. R.; Wegener, G.; Popoli, M.; Sporring, Jon.

    I: Journal of Microscopy, Bind 265, Nr. 1, 2017, s. 101–110.

    Publikation: Bidrag til tidsskriftTidsskriftartikelForskningfagfællebedømt

  2. Udgivet

    3D estimation of synaptic vesicle distributions in serial section transmission electron microscopy. / Khanmohammadi, Mahdieh; Darkner, Sune; Nava, Nicoletta; Nyengaard, Jens Randel; Sporring, Jon.

    2013. Abstract fra European Congress of Stereology and Image Analysis, Kaiserslautern, Tyskland.

    Publikation: KonferencebidragKonferenceabstrakt til konferenceForskningfagfællebedømt

  3. Udgivet
  4. Udgivet

    A hyper elasticity method for interactive virtual design of hearing aids : a parallel method for general non-linear hyper elasticity modeling. / Darkner, Sune; Erleben, Kenny.

    I: Visual Computer, Bind 27, Nr. 6, 2011, s. 645-653.

    Publikation: Bidrag til tidsskriftTidsskriftartikelForskningfagfællebedømt

  5. Udgivet

    A statistical model for simultaneous template estimation, bias correction, and registration of 3D brain images. / Pai, Akshay Sadananda Uppinakudru; Sommer, Stefan Horst; Raket, Lars Lau; Kühnel, Line; Darkner, Sune; Sørensen, Lauge; Nielsen, Mads.

    Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging: MICCAI 2016 International Workshops, MCV and BAMBI, Athens, Greece, October 21, 2016, Revised Selected Papers. red. / Henning Müller; B. Michael Kelm; Tal Arbel; Weidong Cai; M. Jorge Cardoso; Georg Langs; Bjoern Menze; Dmitris Metaxas; Albert Montillo; William M. Wells; Shaoting Zhang; Albert C. S. Chung; Mark Jenkinson; Annemie Ribbens. Springer, 2017. s. 151-159 (Lecture notes in computer science, Bind 10081).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  6. Udgivet

    Adaptive time-stepping in dieomorphic image registration with bounded inverse consistency error. / Pai, Akshay Sadananda Uppinakudru; Klein, Stefan; Sommer, Stefan Horst; Sørensen, Lauge; Darkner, Sune; Sporring, Jon; Nielsen, Mads.

    Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015) . INRIA, 2015. s. 35-47.

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  7. Udgivet

    Adaptive time-stepping in diffeomorphic image registration with bounded inverse consistency error. / Pai, Akshay Sadananda Uppinakudru; Klein, Stefan; Sommer, Stefan Horst; Sørensen, Lauge Emil Borch Laurs; Darkner, Sune; Sporring, Jon; Nielsen, Mads.

    The 18th International Conference on Medical Image Computing and Computer Assisted Intervention: proceedings. Technische Universität München , 2015. s. 35-47.

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  8. Udgivet

    Automatic FDG-PET-based tumor and metastatic lymph node segmentation in cervical cancer. / Rodríguez Arbonès, Dídac; Jensen, Henrik Grønholt; Loft, Annika; af Rosenschöld, Per Munck; Hansen, Anders Elias; Igel, Christian; Darkner, Sune.

    Medical Imaging 2014: Image Processing. red. / Sebastian Ourselin; Martin A. Styner. SPIE - International Society for Optical Engineering, 2014. 903441 (Progress in Biomedical Optics and Imaging; Nr. 35, Bind 15).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  9. Udgivet

    Automatic correction of dental artifacts in PET/MRI. / Ladefoged, Claes N.; Andersen, Flemming L.; Keller, Sune; Beyer, Thomas; Law, Ian; Højgaard, Liselotte; Darkner, Sune; Lauze, Francois Bernard.

    I: SPIE Journal of Medical Imaging, Bind 2, Nr. 2, 024009, 2015.

    Publikation: Bidrag til tidsskriftTidsskriftartikelForskningfagfællebedømt

  10. Udgivet

    Automatic measurement of wrist synovitis from contrast-enhanced MRI : a registration-centered approach . / Mysling, Peter; Darkner, Sune; Sporring, Jon; Dam, Erik; Lillholm, Martin.

    Medical Imaging 2013: Image Processing. red. / Sebastien Ourselin; David R. Haynor. SPIE - International Society for Optical Engineering, 2013. 86692U (Progress in Biomedical Optics and Imaging; Nr. 36, Bind 14).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  11. Udgivet

    Brain Segmentation in Rodent MR-Images Using Convolutional Neural Networks. / Sigurdsson, Björn; Darkner, Sune; Sommer, Stefan Horst; Mortensen, Kristian Nygaard; Sanggaard, Simon; Kostrikov, Serhii; Nedergaard, Maiken.

    2018. Abstract fra Joint Annual Meeting ISMRM-ESMRMB 2018, Paris, Frankrig.

    Publikation: KonferencebidragKonferenceabstrakt til konferenceForskningfagfællebedømt

  12. Udgivet

    Collocation for diffeomorphic deformations in medical image registration. / Darkner, Sune; Pai, Akshay Sadananda Uppinakudru; Liptrot, Matthew George; Sporring, Jon.

    I: I E E E Transactions on Pattern Analysis and Machine Intelligence, Bind 40, Nr. 7, 2018, s. 1570-1583.

    Publikation: Bidrag til tidsskriftTidsskriftartikelForskningfagfællebedømt

  13. Udgivet

    Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation. / Michalkiewicz, Mateusz Dawid; Pai, Akshay Sadananda Uppinakudru; Leung, Kelvin K.; Sommer, Stefan Horst; Darkner, Sune; Sørensen, Lauge; Sporring, Jon; Nielsen, Mads.

    Medical imaging 2016: Image processing. red. / Martin A. Styner; Elsa D. Angelini. SPIE - International Society for Optical Engineering, 2016. 978406 (Progress in Biomedical Optics and Imaging).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  14. Udgivet

    Comparison of several computational pipelines for atrophy computation in longitudinal Alzheimers studies. / Pai, Akshay Sadananda Uppinakudru; Sommer, Stefan Horst; Darkner, Sune; Sørensen, Lauge Emil Borch Laurs; Sporring, Jon; Nielsen, Mads.

    2015. Abstract fra 101st Scientific Assembly and Annual Meeting of the Radiological Society of North America , Chicago, USA.

    Publikation: KonferencebidragKonferenceabstrakt til konferenceForskningfagfællebedømt

  15. Udgivet

    Conforming contact manifolds for multibody simulations. / Visseq, Vincent; Bonde, Ulrik; Erleben, Kenny; Darkner, Sune.

    2014. Abstract fra World Congress on Computational Mechanics (WCCM XI), Barcelona, Spanien.

    Publikation: KonferencebidragKonferenceabstrakt til konferenceForskning

  16. Udgivet

    Cube propagation for focal brain atrophy estimation. / Pai, Akshay Sadananda Uppinakudru; Sørensen, Lauge; Darkner, Sune; Mysling, Peter; Jørgensen, Dan Richter; Dam, Erik B.; Lillholm, Martin; Oh, Joonmi; Chen, Gennan; Suhy, Joyce; Sporring, Jon; Nielsen, Mads.

    2013 IEEE 10th International Symposium on Biomedical Imaging. IEEE, 2013. s. 402-405.

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  17. Udgivet

    Data Driven Inverse Kinematics of Soft Robots using Local Models. / Holsten, Fredrik; Engell-norregard, Morten Pol; Darkner, Sune; Erleben, Kenny.

    2019 International Conference on Robotics and Automation (ICRA). IEEE, 2019. s. 6251-6257.

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  18. Udgivet

    Data driven constraints for the SVM. / Darkner, Sune; Clemmensen, Line H.

    Machine Learning in Medical Imaging: Third International Workshop, MLMI 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 1, 2012, Revised Selected Papers. red. / Fei Wang; Dinggang Shen; Pingkun Yan; Kenji Suzuki. Springer, 2012. s. 70-77 (Lecture notes in computer science, Bind 7588).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  19. Udgivet

    Deformation-based atrophy computation by surface propagation and its application to Alzheimer’s disease. / Pai, Akshay Sadananda Uppinakudru; Sporring, Jon; Darkner, Sune; Dam, Erik Bjørnager; Lillholm, Martin; Jørgensen, Dan; Oh, Joonmi; Chen, Gennan; Suhy, Joyce; Sørensen, Lauge; Nielsen, Mads.

    I: SPIE Journal of Medical Imaging, Bind 3, Nr. 1, 014005, 2016.

    Publikation: Bidrag til tidsskriftTidsskriftartikelForskningfagfællebedømt

  20. Udgivet

    Density-based non-rigid registration of diffusion-weighted images. / Jensen, Henrik Grønholt; Lauze, Francois Bernard; Nielsen, Mads; Darkner, Sune.

    2017. Abstract fra 25th ISMRM Annual Meeting, Honolulu, USA.

    Publikation: KonferencebidragKonferenceabstrakt til konferenceForskningfagfællebedømt

  21. Udgivet

    Deterministic Group Tractography with Local Uncertainty Quantification. / Holm, Andreas Nugaard; Feragen, Aasa; Dela Haije, Tom; Darkner, Sune.

    Computational Diffusion: International MICCAI Workshop, Granada,. red. / Elisenda Bonet-Carne; Francesco Grussu; Lipeng Ning; Farshid Sepehrband; Chantal M. W. Tax. 226249. udg. Springer, 2019. s. 377-386 (Mathematics and Visualization).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  22. Udgivet

    Diffeomorphic image registration with automatic time-step adjustment. / Pai, Akshay Sadananda Uppinakudru; Klein, S.; Sommer, Stefan Horst; Darkner, Sune; Sporring, Jon; Nielsen, Mads.

    Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on. IEEE, 2015. s. 1085-1088.

    Publikation: Bidrag til bog/antologi/rapportBidrag til bog/antologiForskningfagfællebedømt

  23. Udgivet

    Efficient hyperelastic regularization for registration. / Darkner, Sune; Hansen, Michael Sass; Larsen, Rasmus; Hansen, Mads F.

    Image Analysis: 17th Scandinavian Conference, SCIA 2011, Ystad, Sweden, May 2011. Proceedings. red. / Anders Heyden; Fredrik Kahl. Springer, 2011. s. 295-305 (Lecture notes in computer science, Bind 6688).

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  24. Udgivet

    Estimating the thickness of ultra thin sections for electron microscopy by image statistics. / Sporring, Jon; Khanmohammadi, Mahdieh; Darkner, Sune; Nava, Nicoletta; Nyengaard, Jens Randel; Jensen, Eva B. Vedel.

    2014 IEEE International Symposium on Biomedical Imaging. IEEE, 2014. s. 157-160.

    Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

  25. Udgivet

    Evaluation of WBAA with registration-based cube propagation for brain atrophy quantification. / Lillholm, Martin; Pai, Akshay Sadananda Uppinakudru; Sørensen, Lauge; Nielsen, Mads; Sporring, Jon; Darkner, Sune; Dam, Erik.

    2013. Abstract fra 99th Scientific Assembly and Annual Meeting of the Radiological Society of North America, Chicago, USA.

    Publikation: KonferencebidragKonferenceabstrakt til konferenceForskningfagfællebedømt

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