Jon Sporring

Jon Sporring

Professor


  1. 2024
  2. E-pub ahead of print

    Young glial progenitor cells competitively replace aged and diseased human glia in the adult chimeric mouse brain

    Vieira, R., Mariani, J. N., Huynh, N. P. T., Stephensen, Hans Jacob Teglbjærg, Solly, R., Tate, A., Schanz, S., Cotrupi, N., Mousaei, M., Sporring, Jon, Benraiss, A. & Goldman, Steven Alan, 2024, (E-pub ahead of print) In: Nature Biotechnology.

    Research output: Contribution to journalJournal articlepeer-review

  3. 2023
  4. Published

    Parametric Volumetric Registration

    Yushkevich, P. A., Zhang, M. & Sporring, Jon, 29 Sep 2023, Medical Image Analysis. Frangi, A., Prince, J. & Sonka, M. (eds.). Academic Press, p. 331-354 24 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  5. Published

    A Practical Approach to Estimating the Effect of Synchrotron Radiation on Sperm Motility and Viability

    Lindhøj, M. B., Bonnin, A., Almstrup, K., Dyrby, T., Mokso, R. & Sporring, Jon, 2023, bioRxiv, 18 p.

    Research output: Working paperPreprintResearch

  6. Published

    Astrocytic engagement of the corticostriatal synaptic cleft is disrupted in a mouse model of Huntington’s disease

    Villanueva, C. B., Stephensen, Hans Jacob Teglbjærg, Mokso, R., Benraiss, A., Sporring, Jon & Goldman, Steven Alan, 2023, In: Proceedings of the National Academy of Sciences USA (PNAS). 120, 24, 11 p., e2210719120.

    Research output: Contribution to journalJournal articlepeer-review

  7. Published

    Morphology on Categorical Distributions

    Ørting, S. N., Stephensen, Hans Jacob Teglbjærg & Sporring, Jon, 2023, In: Journal of Mathematical Imaging and Vision. 65, p. 861–873

    Research output: Contribution to journalJournal articlepeer-review

  8. Published

    Multi-scale and Multi-resolution

    Sporring, Jon, 2023, Medical Image Analysis. Frangi, A., Prince, J. & Sonka, M. (eds.). Elsevier, 33 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  9. Published

    Multiscale and multiresolution analysis

    Sporring, Jon, 2023, Medical Image Analysis. Academic Press, p. 177-197

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  10. 2022
  11. Published

    Extracting Mitochondrial Cristae Characteristics from 3D Focused Ion Beam Scanning Electron Microscopy Data

    Wang, Chenhao, Østergård, L., Hasselholt, S. & Sporring, Jon, 9 Nov 2022, bioRxiv. 20 p.

    Research output: Book/ReportReport

  12. Published

    Reconstructing Binary Signals from Local Histograms

    Sporring, Jon & Darkner, Sune, 21 Mar 2022, In: Entropy. 24, 3, p. 1-11 433.

    Research output: Contribution to journalJournal articlepeer-review

  13. Published

    An algebra for local histograms

    Sporring, Jon & Darkner, Sune, 2022, In: Frontiers in Computer Science. 4, p. 1-9 939563.

    Research output: Contribution to journalJournal articlepeer-review

  14. Published

    Layer III pyramidal cells in the prefrontal cortex reveal morphological changes in subjects with depression, schizophrenia, and suicide

    Larsen, N. Y., Vihrs, N., Møller, J., Sporring, Jon, Tan, X., Li, X., Ji, G., Rajkowska, G., Sun, F. & Nyengaard, J. R., 2022, In: Translational Psychiatry. 12, 1, p. 363 1 p.

    Research output: Contribution to journalJournal articlepeer-review

  15. 2021
  16. Published

    Cellular 3D-reconstruction and analysis in the human cerebral cortex using automatic serial sections

    Larsen, N. Y., Li, X., Tan, X., Ji, G., Lin, J., Rajkowska, G., Møller, J., Vihrs, N., Sporring, Jon, Sun, F. & Nyengaard, J. R., Dec 2021, In: Communications Biology . 4, 1, 15 p., 1030.

    Research output: Contribution to journalJournal articlepeer-review

  17. Published

    Currents and K-functions for Fiber Point Processes

    Hansen, P. E. H., Waagepetersen, R. P., Svane, A. M., Sporring, Jon, Stephensen, Hans Jacob Teglbjærg, Hasselholt, S. & Sommer, Stefan Horst, 2021, arXiv preprint. 12 p.

    Research output: Book/ReportReport

  18. Published

    Currents and K-functions for Fiber Point Processes

    Hansen, P. E. H., Waagepetersen, R. P., Svane, A. M., Sporring, Jon, Stephensen, Hans Jacob Teglbjærg, Hasselholt, S. & Sommer, Stefan Horst, 2021, Geometric Science of Information: 5th International Conference, GSI 2021, Paris, France, July 21–23, 2021, Proceedings. Nielsen, F. & Barbaresco, F. (eds.). Springer, p. 127-134 (Lecture Notes in Computer Science, Vol. 12829).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  19. Published

    How Few Annotations are Needed for Segmentation Using a Multi-planar U-Net?

    Laprade, W. M., Perslev, M. & Sporring, Jon, 2021, Deep Generative Models, and Data Augmentation, Labelling, and Imperfections - First Workshop, DGM4MICCAI 2021, and First Workshop, DALI 2021, Held in Conjunction with MICCAI 2021, Proceedings. Engelhardt, S., Oksuz, I., Zhu, D., Yuan, Y., Mukhopadhyay, A., Heller, N., Huang, S. X., Nguyen, H., Sznitman, R. & Xue, Y. (eds.). Springer, p. 209-216 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 13003 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  20. Published

    Measuring Shape Relations Using r-Parallel Sets

    Stephensen, Hans Jacob Teglbjærg, Svane, A. M., Villanueva, C. B., Goldman, Steven Alan & Sporring, Jon, 2021, In: Journal of Mathematical Imaging and Vision. 63, p. 1069–1083 15 p.

    Research output: Contribution to journalJournal articlepeer-review

  21. 2020
  22. Published

    Morphology on categorical distributions

    Ørting, S. N., Stephensen, Hans Jacob Teglbjærg & Sporring, Jon, 14 Dec 2020, arXiv.org.

    Research output: Book/ReportReport

  23. Published
  24. Published

    A Novel Approach to Tongue Standardization and Feature Extraction

    Wang, Chenhao, Cattaneo, C., Liu, J., Bredie, Wender, Pagliarini, E. & Sporring, Jon, 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020: 23rd International Conference, Proceedings. Martel, A. L., Abolmaesumi, P., Stoyanov, D., Mateus, D., Zuluaga, M. A., Zhou, S. K., Racoceanu, D. & Joskowicz, L. (eds.). Springer, p. 36-45 (Lecture Notes in Computer Science, Vol. 12265 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  25. Published

    Comparison of manual and machine learning image processing approaches to determine fungiform papillae on the tongue

    Cattaneo, C., Liu, J., Wang, Chenhao, Pagliarini, E., Sporring, Jon & Bredie, Wender, 2020, bioRxiv, 18 p.

    Research output: Working paperPreprintResearch

  26. Published

    Comparison of manual and machine learning image processing approaches to determine fungiform papillae on the tongue

    Cattaneo, C., Liu, J., Wang, Chenhao, Pagliarini, E., Sporring, Jon & Bredie, Wender, 2020, In: Scientific Reports. 10, 15 p., 18694.

    Research output: Contribution to journalJournal articlepeer-review

  27. Published

    Restoring drifted electron microscope volumes using synaptic vesicles at sub-pixel accuracy

    Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 2020, In: Communications Biology. 3, 1, 7 p., ´81.

    Research output: Contribution to journalJournal articlepeer-review

  28. 2019
  29. Published

    Drift Corrector Software

    Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 20 Aug 2019

    Research output: Non-textual formComputer programmeResearch

  30. Published

    Using a high-level parallel programming language for GPU-accelerated tomographic reconstruction

    Lindhøj, M. B., Henriksen, Troels, Pedersen, L. & Sporring, Jon, 15 Jul 2019, The 2019 International Conference on High Performance Computing & Simulation: HPCS 2019. IEEE, p. 27-32 6 p. 3

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  31. Published

    Generalizations of Ripley’s K-function with Application to Space Curves

    Sporring, Jon, Waagepetersen, R. P. & Sommer, Stefan Horst, Jun 2019, Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Hong Kong, China, 2019, Proceedings: 26th International Conference, IPMI 2019, Hong Kong, China, June 2–7, 2019, Proceedings. Springer, p. 731-742 (Lecture Notes in Computer Science, Vol. 11492).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  32. Published

    Experimental cerebral malaria is associated with profound loss of both glycan and protein components of the endothelial glycocalyx

    Hempel, C., Sporring, Jon & Kurtzhals, Jørgen, 2019, In: F A S E B Journal. 33, 2, p. 2058-2071

    Research output: Contribution to journalJournal articlepeer-review

  33. Published

    Muscle fibre morphology and microarchitecture in cerebral palsy patients obtained by 3D synchrotron X-ray computed tomography

    Borg, L., Sporring, Jon, Dam, Erik Bjørnager, Dahl, V. A., Dyrby, T. B., Feidenhans'l, Robert Krarup, Dahl, A. B. & Pingel, Jessica, 2019, In: Computers in Biology and Medicine. 107, p. 265-269 5 p.

    Research output: Contribution to journalJournal articlepeer-review

  34. 2018
  35. Published

    Collocation for diffeomorphic deformations in medical image registration

    Darkner, Sune, Pai, A. S. U., Liptrot, M. G. & Sporring, Jon, 2018, In: I E E E Transactions on Pattern Analysis and Machine Intelligence. 40, 7, p. 1570-1583

    Research output: Contribution to journalJournal articlepeer-review

  36. Published

    Estimating the continuous entropy of a discrete set of orientations in R3

    Sporring, Jon, 2018, Copenhagen: Department of Computer Science, University of Copenhagen. 6 p. (Technical Report; No. 1, Vol. 2018).

    Research output: Book/ReportReport

  37. 2017
  38. Published

    Reduction of variable-truncation artifacts from beam occlusion during in situ x-ray tomography

    Borg, L., Jørgensen, J. S., Frikel, J. & Sporring, Jon, Dec 2017, In: Measurement Science and Technology. 28, 12, 19 p., 124004.

    Research output: Contribution to journalJournal articlepeer-review

  39. Published

    Synchrotron radiation μCT and histology evaluation of bone-to-implant contact

    Neldam, C. A., Sporring, Jon, Rack, A., Lauridsen, T., Hauge, E. M., Jørgensen, H. L., Jørgensen, Niklas Rye, Feidenhans'l, Robert Krarup & Pinholt, E. M., Sep 2017, In: Journal of Cranio-Maxillofacial Surgery. 45, 9, p. 1448-1457 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  40. Published

    Towards characterizing and reducing artifacts caused by varying projection truncation

    Borg, L., Jørgensen, J. S. & Sporring, Jon, 24 Feb 2017, Department of Computer Science, University of Copenhagen. 42 p. (Datalogisk Institut. Københavns Universitet. Technical Reports; No. 1, Vol. 2017).

    Research output: Book/ReportReport

  41. Published

    3D analysis of synaptic vesicle density and distribution after acute foot-shock stress by using serial section transmission electron microscopy

    Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R., Wegener, G., Popoli, M. & Sporring, Jon, 2017, In: Journal of Microscopy. 265, 1, p. 101–110 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  42. Published

    3D estimation of synaptic vesicle distributions in serial section transmission electron microscopy

    Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R., Wegener, G., Popoli, M. & Sporring, Jon, 2017, In: Journal of Microscopy. 265, 1, p. 101–110 1 p.

    Research output: Contribution to journalJournal articlepeer-review

  43. Published

    Estimation of sample spacing in stochastic processes

    Rønn-Nielsen, A., Sporring, Jon & Jensen, E. B. V., 2017, In: Image Analysis and Stereology. 36, 1, p. 43-49 7 p.

    Research output: Contribution to journalJournal articlepeer-review

  44. Published

    Reducing artifacts from varying projection truncations

    Borg, L., Jørgensen, J. S., Frikel, J., Quinto, E. T. & Sporring, Jon, 2017. 2 p.

    Research output: Contribution to conferencePaperResearchpeer-review

  45. 2016
  46. Published

    Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation

    Michalkiewicz, M. D., Pai, A. S. U., Leung, K. K., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L., Sporring, Jon & Nielsen, Mads, 2016, Medical imaging 2016: Image processing. Styner, M. A. & Angelini, E. D. (eds.). SPIE - International Society for Optical Engineering, 6 p. 978406. (Progress in Biomedical Optics and Imaging).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  47. Published

    Deformation-based atrophy computation by surface propagation and its application to Alzheimer’s disease

    Pai, A. S. U., Sporring, Jon, Darkner, Sune, Dam, Erik Bjørnager, Lillholm, Martin, Jørgensen, D., Oh, J., Chen, G., Suhy, J., Sørensen, L. & Nielsen, Mads, 2016, In: SPIE Journal of Medical Imaging. 3, 1, 11 p., 014005.

    Research output: Contribution to journalJournal articlepeer-review

  48. Published

    Kernel bundle diffeomorphic image registration using stationary velocity fields and Wendland basis functions

    Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2016, In: IEEE Transactions on Medical Imaging. 35, 6, p. 1369-1380 12 p.

    Research output: Contribution to journalJournal articlepeer-review

  49. Published

    Recovery of missing information in diffusion magnetic resonance imaging data

    Siddiqi, K., Piuze-Phaneuf, E. & Sporring, Jon, 2016, Patent No. US 2016/0335786 A1, 17 Nov 2016

    Research output: Patent

  50. 2015
  51. Published

    Adaptive time-stepping in dieomorphic image registration with bounded inverse consistency error

    Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015) . INRIA, p. 35-47

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  52. Published

    Adaptive time-stepping in diffeomorphic image registration with bounded inverse consistency error

    Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L. E. B. L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, The 18th International Conference on Medical Image Computing and Computer Assisted Intervention: proceedings. Technische Universität München , p. 35-47 13 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  53. Published

    Analysis of shape and spatial interaction of synaptic vesicles using data from focused ion beam scanning electron microscopy (FIB-SEM)

    Khanmohammadi, M., Waagepetersen, R. P. & Sporring, Jon, 2015, In: Frontiers in Neuroanatomy. 9, 11 p., 116.

    Research output: Contribution to journalJournal articlepeer-review

  54. Published

    Comparison of several computational pipelines for atrophy computation in longitudinal Alzheimers studies

    Pai, A. S. U., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L. E. B. L., Sporring, Jon & Nielsen, Mads, 2015. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  55. Published

    Connection forms for beating the heart

    Mensch, A., Piuze, E., Lehnert, L., Backermans, A. J., Sporring, Jon, Strijkers, G. J. & Siddiqi, K., 2015, Statistical Atlases and Computational Models of the Heart - Imaging and Modelling Challenges: 5th International Workshop, STACOM 2014, Held in Conjunction with MICCAI 2014, Boston, MA, USA, September 18, 2014, Revised Selected Papers. Camara, O., Mansi, T., Pop, M., Rhode, K., Sermesant, M. & Young, A. (eds.). Springer, p. 83-92 10 p. (Lecture notes in computer science, Vol. 8896).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  56. Published

    Diffeomorphic image registration with automatic time-step adjustment

    Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI). IEEE, p. 1085-1088 4 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  57. Published

    Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel

    Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Medical Imaging 2015: Image Processing. SPIE - International Society for Optical Engineering, 7 p. (Proceedings of S P I E - International Society for Optical Engineering, Vol. 9413).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  58. Published

    Matematik på hjertet: bedre diagnosticering af hjertesygdomme

    Sporring, Jon, 2015, Naturen i computeren. Det Natur- og Biovidenskabelige Fakultet, Københavns Universitet, p. 12-13 2 p. (Temahæfte, Vol. 2015).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterEducation

  59. Published

    Maurer-cartan forms for fields on surfaces: application to heart fiber geometry

    Piuze, E., Sporring, Jon & Siddiqi, K., 2015, In: IEEE Transactions on Pattern Analysis and Machine Intelligence. 37, 12, p. 2492-2504 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  60. Published

    Method of modelling and characterising heart fiber geometry, involves determining whether new fitting energy meets predetermined threshold when predetermined threshold is met iterative process is terminated

    Siddiqi, K., Piuze-Phaneuf, E., Sporring, Jon, Savadjiev, P., Strijkers, G. & Zucker, S., 2015, IPC No. G06T-011/00, Patent No. US2015332483-A1, 19 Nov 2015, Priority date 15 May 2014, Priority No. US993600P

    Research output: Patent

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