Sune Darkner

Sune Darkner

Associate Professor


  1. 2024
  2. Published

    An Automatic DWI/FLAIR Mismatch Assessment of Stroke Patients

    Johansen, Jacob, Offersen, C. M., Carlsen, Jonathan Frederik, Ingala, S., Hansen, Adam Espe, Nielsen, Michael Bachmann, Darkner, Sune & Pai, A., 2024, In: Diagnostics. 14, 1, 12 p., 69.

    Research output: Contribution to journalJournal articlepeer-review

  3. 2023
  4. Published

    A hybrid approach to full-scale reconstruction of renal arterial network

    Xu, Peidi, von Holstein-Rathlou, Niels-Henrik, Søgaard, S. B., Gundlach, C., Sorensen, Charlotte Mehlin, Erleben, Kenny, Sosnovtseva, Olga & Darkner, Sune, 9 May 2023, In: Scientific Reports. 13, 1, 15 p., 7569.

    Research output: Contribution to journalJournal articlepeer-review

  5. Published

    Collision-constrained deformable image registration framework for discontinuity management

    Alscher, Thomas Michael, Erleben, Kenny & Darkner, Sune, 2023, In: PLoS ONE. 18, 8, 15 p., e0290243.

    Research output: Contribution to journalJournal articlepeer-review

  6. Published
  7. Published

    Deep-learning-based segmentation of individual tooth and bone with periodontal ligament interface details for simulation purposes

    Xu, Peidi, Gholamalizadeh, T., Moshfeghifar, Faezeh, Darkner, Sune & Erleben, Kenny, 2023, In: IEEE Access. 11, p. 102460-102470

    Research output: Contribution to journalJournal articlepeer-review

  8. Published

    Extremely Weakly-Supervised Blood Vessel Segmentation with Physiologically Based Synthesis and Domain Adaptation

    Xu, Peidi, Lee, B., Sosnovtseva, Olga, Sorensen, Charlotte Mehlin, Erleben, Kenny & Darkner, Sune, 2023, Medical Image Learning with Limited and Noisy Data - 2nd International Workshop, MILLanD 2023, Held in Conjunction with MICCAI 2023, Proceedings. Xue, Z., Antani, S., Zamzmi, G., Yang, F., Rajaraman, S., Liang, Z., Huang, S. X. & Linguraru, M. G. (eds.). Springer, p. 191-201 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 14307 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  9. Published

    Performance and Agreement When Annotating Chest X-ray Text Reports - A Preliminary Step in the Development of a Deep Learning-Based Prioritization and Detection System

    Li, D., Pehrson, Lea Marie, Bonnevie, R., Fraccaro, M., Thrane, J., Tøttrup, L., Lauridsen, C. A., Balaganeshan, Sedrah Butt, Jankovic, J., Andersen, T. T., Mayar, A., Hansen, Kristoffer Lindskov, Carlsen, Jonathan Frederik, Darkner, Sune & Nielsen, Michael Bachmann, 2023, In: Diagnostics. 13, 6, 24 p.

    Research output: Contribution to journalJournal articlepeer-review

  10. Published

    Pseudo-Label Guided Image Synthesis for Semi-Supervised COVID-19 Pneumonia Infection Segmentation

    Lyu, F., Ye, M., Carlsen, J. F., Erleben, Kenny, Darkner, Sune & Yuen, P. C., 2023, In: IEEE Transactions on Medical Imaging. 42, 3, p. 797-809

    Research output: Contribution to journalJournal articlepeer-review

  11. Published
  12. Published

    cRedAnno+: Annotation Exploitation In Self-Explanatory Lung Nodule Diagnosis

    Lu, J., Yin, C., Erleben, Kenny, Nielsen, Michael Bachmann & Darkner, Sune, 2023, 2023 IEEE International Symposium on Biomedical Imaging, ISBI 2023. IEEE Computer Society Press, (Proceedings - International Symposium on Biomedical Imaging, Vol. 2023-April).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  13. 2022
  14. Published

    Open-Full-Jaw: An open-access dataset and pipeline for finite element models of human jaw

    Gholamalizadeh, T., Moshfeghifar, Faezeh, Ferguson, Z., Schneider, T., Panozzo, D., Darkner, Sune, Makaremi, M., Chan, F., Lempel Søndergaard, P. & Erleben, Kenny, 1 Sep 2022, In: Computer Methods and Programs in Biomedicine. 224, 17 p., 107009.

    Research output: Contribution to journalJournal articlepeer-review

  15. Published

    Accuracy and consistency of intensity-based deformable image registration in 4DCT for tumor motion estimation in liver radiotherapy planning

    Tascon-Vidarte, J. D., Stick, L. B., Josipovic, Mirjana, Risum, S., Jomier, J., Erleben, Kenny, Vogelius, Ivan R. & Darkner, Sune, Jul 2022, In: PLoS ONE. 17, 7 July, p. 1-15 e0271064.

    Research output: Contribution to journalJournal articlepeer-review

  16. Published

    Reconstructing Binary Signals from Local Histograms

    Sporring, Jon & Darkner, Sune, 21 Mar 2022, In: Entropy. 24, 3, p. 1-11 433.

    Research output: Contribution to journalJournal articlepeer-review

  17. Published

    A Direct Geometry Processing Cartilage Generation Method Using Segmented Bone Models from Datasets with Poor Cartilage Visibility

    Moshfeghifar, Faezeh, Nielsen, M. K., Tascon Vidarte, J. D., Darkner, Sune & Erleben, Kenny, 2022, Computational Biomechanics for Medicine: Towards Translation and Better Patient Outcomes. Springer, p. 155.169

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  18. Published

    An algebra for local histograms

    Sporring, Jon & Darkner, Sune, 2022, In: Frontiers in Computer Science. 4, p. 1-9 939563.

    Research output: Contribution to journalJournal articlepeer-review

  19. Published

    Auto-segmentation of Hip Joints Using MultiPlanar UNet with Transfer Learning

    Xu, Peidi, Moshfeghifar, Faezeh, Gholamalizadeh, T., Nielsen, Michael Bachmann, Erleben, Kenny & Darkner, Sune, 2022, Medical Image Learning with Limited and Noisy Data: First International Workshop, MILLanD 2022 Held in Conjunction with MICCAI 2022 Singapore, September 22, 2022 Proceedings. Zamzmi, G., Antani, S., Rajaraman, S., Xue, Z., Bagci, U. & Linguraru, M. G. (eds.). Springer Science and Business Media Deutschland GmbH, p. 153-162 10 p. (Medical Image Learning with Limited and Noisy Data, Vol. 13559).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  20. Published

    Bundle geodesic convolutional neural network for diffusion-weighted imaging segmentation

    Liu, Renfei, Lauze, Francois Bernard, Erleben, Kenny, Berg, Rune W. & Darkner, Sune, 2022, In: Journal of Medical Imaging. 9, 6, 14 p., 064002.

    Research output: Contribution to journalJournal articlepeer-review

  21. Published

    Fast Vortex Particle Method for Fluid-Character Interaction

    Meldgaard, A., Darkner, Sune & Erleben, Kenny, 2022, In: OpenReview.net. 2022, 7 p.

    Research output: Contribution to journalConference article

  22. Published

    Information-Theoretic Registration with Explicit Reorientation of Diffusion-Weighted Images

    Jensen, H. G., Lauze, Francois Bernard & Darkner, Sune, 2022, In: Journal of Mathematical Imaging and Vision. 64, p. 1-16

    Research output: Contribution to journalJournal articlepeer-review

  23. Published

    Inter- and Intra-Observer Agreement When Using a Diagnostic Labeling Scheme for Annotating Findings on Chest X-rays—An Early Step in the Development of a Deep Learning-Based Decision Support System

    Li, D., Pehrson, Lea Marie, Tøttrup, L., Fraccaro, M., Bonnevie, R., Thrane, J., Sørensen, P. J., Rykkje, A., Andersen, T. T., Steglich-Arnholm, H., Stærk, D. M. R., Borgwardt, L., Hansen, Kristoffer Lindskov, Darkner, Sune, Carlsen, Jonathan Frederik & Nielsen, Michael Bachmann, 2022, In: Diagnostics. 12, 12, 3112.

    Research output: Contribution to journalJournal articlepeer-review

  24. Published

    LibHip: An open-access hip joint model repository suitable for finite element method simulation

    Moshfeghifar, Faezeh, Gholamalizadeh, T., Ferguson, Z., Schneider, T., Nielsen, Michael Bachmann, Panozzo, D., Darkner, Sune & Erleben, Kenny, 2022, In: Computer Methods and Programs in Biomedicine. 226, 14 p., 107140.

    Research output: Contribution to journalJournal articlepeer-review

  25. Published

    Reducing Annotation Need in Self-explanatory Models for Lung Nodule Diagnosis

    Lu, J., Yin, C., Krause, Oswin, Erleben, Kenny, Nielsen, Michael Bachmann & Darkner, Sune, 2022, Interpretability of Machine Intelligence in Medical Image Computing. Reyes, M., Abreu, PH. & Cardoso, J. (eds.). Springer, p. 33-43 (Lecture Notes in Computer Science, Vol. 13611).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  26. Published

    Revisiting Transformer-based Models for Long Document Classification

    Dai, X., Chalkidis, Ilias, Darkner, Sune & Elliott, Desmond, 2022, Findings of the Association for Computational Linguistics: EMNLP 2022. Association for Computational Linguistics, p. 7212–7230

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  27. Published

    RootPainter3D: Interactive-machine-learning enables rapid and accurate contouring for radiotherapy

    Smith, Abraham George, Petersen, Jens, Terrones-Campos, C., Berthelsen, A. K., Forbes, N. J., Darkner, Sune, Specht, Lena & Vogelius, I. R., 2022, In: Medical Physics. 49, 1, p. 461-473

    Research output: Contribution to journalJournal articlepeer-review

  28. 2021
  29. Published

    A framework for voxel-based assessment of biological effect after proton radiotherapy in pediatric brain cancer patients using multi-modal imaging

    Skaarup, M., Lundemann, M. J., Darkner, Sune, Jorgensen, M., Marner, Lisbeth, Mirkovic, D., Grosshans, D., Peeler, C., Mohan, R., Vogelius, Ivan R. & Appelt, A., 10 Jun 2021, In: Medical Physics. 48, 7, 12 p., 4110-4121.

    Research output: Contribution to journalJournal articlepeer-review

  30. Published

    U-Sleep: resilient high-frequency sleep staging

    Perslev, M., Darkner, Sune, Kempfner, L., Nikolic, M., Jennum, Poul & Igel, Christian, 15 Apr 2021, In: npj Digital Medicine. 4, 1, 12 p., 72.

    Research output: Contribution to journalJournal articlepeer-review

  31. Published

    A multi-patient analysis of the center of rotation trajectories using finite element models of the human mandible

    Gholamalizadeh, T., Darkner, Sune, Søndergaard, P. L. & Erleben, Kenny, 2021, In: PLoS ONE. 16, 11 November, 16 p., e0259794.

    Research output: Contribution to journalJournal articlepeer-review

  32. Published

    Bundle Geodesic Convolutional Neural Network for DWI Segmentation from Single Scan Learning

    Liu, Renfei, Lauze, Francois Bernard, Erleben, Kenny & Darkner, Sune, 2021, Computational Diffusion MRI - 12th International Workshop, CDMRI 2021, Held in Conjunction with MICCAI 2021, Proceedings. Cetin-Karayumak, S., Christiaens, D., Figini, M., Guevara, P., Gyori, N., Nath, V. & Pieciak, T. (eds.). Springer, p. 121-132 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 13006 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  33. Published

    Cine-MRI Simulation to Evaluate Tumor Tracking

    Tascón-Vidarte, J. D., Wahlstedt, I., Jomier, J., Erleben, Kenny, Vogelius, Ivan R. & Darkner, Sune, 2021, Simulation and Synthesis in Medical Imaging - 6th International Workshop, SASHIMI 2021, Held in Conjunction with MICCAI 2021, Proceedings. Svoboda, D., Burgos, N., Wolterink, J. M. & Zhao, C. (eds.). Springer, p. 131-141 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 12965 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  34. Published

    Contact modeling from images using cut finite element solvers

    Claus, S., Kerfriden, P., Moshfeghifar, Faezeh, Darkner, Sune, Erleben, Kenny & Wong, Christian, 2021, In: Advanced Modeling and Simulation in Engineering Sciences. 8, 1, p. 1-23 13.

    Research output: Contribution to journalJournal articlepeer-review

  35. Published

    First Order Locally Orderless Registration

    Darkner, Sune, Vidarte, J. D. T. & Lauze, Francois Bernard, 2021, Scale Space and Variational Methods in Computer Vision - 8th International Conference, SSVM 2021, Proceedings. Elmoataz, A., Fadili, J., Quéau, Y., Rabin, J. & Simon, L. (eds.). Springer, p. 177-188 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 12679 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  36. Published

    Global Position Prediction for Interactive Motion Capture

    Schreiner, Paul, Perepichka, M., Lewis, H., Darkner, Sune, Kry, P. G., Erleben, Kenny & Zordan, V. B., 2021, In: Proceedings of the ACM on Computer Graphics and Interactive Techniques. 4, 3, p. 1-16 3479985.

    Research output: Contribution to journalJournal articlepeer-review

  37. Published

    OpenJaw Dataset

    Gholamalizadeh, T., Darkner, Sune, Søndergaard, P. & Erleben, Kenny, 2021

    Research output: Non-textual formDatasetResearch

  38. Published
  39. 2020
  40. Published
  41. Published

    Mandibular Teeth Movement Variations in Tipping Scenario: A Finite Element Study on Several Patients

    Gholamalizadeh, T., Darkner, Sune, Cattaneo, P. M., Søndergaard, P. & Erleben, Kenny, 2020. 10 p.

    Research output: Contribution to conferencePaperResearch

  42. Published

    Restoring drifted electron microscope volumes using synaptic vesicles at sub-pixel accuracy

    Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 2020, In: Communications Biology. 3, 1, 7 p., ´81.

    Research output: Contribution to journalJournal articlepeer-review

  43. 2019
  44. Published

    U-Time: A Fully Convolutional Network for Time Series Segmentation Applied to Sleep Staging

    Perslev, M., Hejselbak Jensen, M., Darkner, Sune, Jørgen Jennum, P. & Igel, Christian, 1 Oct 2019, Advances in Neural Information Processing Systems 32 (NIPS 2019). NIPS Proceedings, Vol. 32. p. 4415-4426

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  45. Published

    Drift Corrector Software

    Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 20 Aug 2019

    Research output: Non-textual formComputer programmeResearch

  46. Published

    Data Driven Inverse Kinematics of Soft Robots using Local Models

    Holsten, F., Engell-norregard, M. P., Darkner, Sune & Erleben, Kenny, 2019, 2019 International Conference on Robotics and Automation (ICRA). IEEE, p. 6251-6257

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  47. Published

    Deterministic Group Tractography with Local Uncertainty Quantification

    Holm, Andreas Nugaard, Feragen, A., Dela Haije, T. & Darkner, Sune, 2019, Computational Diffusion: International MICCAI Workshop, Granada,. Bonet-Carne, E., Grussu, F., Ning, L., Sepehrband, F. & Tax, C. M. W. (eds.). 226249 ed. Springer, p. 377-386 (Mathematics and Visualization).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  48. Published

    TopAwaRe: Topology-Aware Registration

    Nielsen, R. K., Darkner, Sune & Feragen, A., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer VS, p. 364-372 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11765 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  49. 2018
  50. Published

    Safety and Efficacy of Mesenchymal Stem Cells for Radiation-Induced Xerostomia: A Randomized, Placebo-Controlled Phase 1/2 Trial (MESRIX)

    Grønhøj, C., Jensen, D. H., Vester-Glowinski, Peter Viktor, Jensen, S. B., Bardow, A., Oliveri, R. S., Fog, L. M., Specht, Lena, Thomsen, C., Darkner, Sune, Jensen, M., Müller, V., Kiss, K., Agander, T., Andersen, E., Fischer-Nielsen, A. & von Buchwald, Christian, 1 Jul 2018, In: International Journal of Radiation Oncology, Biology, Physics. 101, 3, p. 581-592 12 p.

    Research output: Contribution to journalJournal articlepeer-review

  51. Published

    Brain Segmentation in Rodent MR-Images Using Convolutional Neural Networks

    Sigurdsson, B., Darkner, Sune, Sommer, Stefan Horst, Mortensen, K. N., Sanggaard, S., Kostrikov, S. & Nedergaard, Maiken, 2018.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  52. Published

    Collocation for diffeomorphic deformations in medical image registration

    Darkner, Sune, Pai, A. S. U., Liptrot, M. G. & Sporring, Jon, 2018, In: I E E E Transactions on Pattern Analysis and Machine Intelligence. 40, 7, p. 1570-1583

    Research output: Contribution to journalJournal articlepeer-review

  53. 2017
  54. Published

    Hippocampal texture predicts rate of cognitive decline in mild cognitive impairment

    Pai, A. S. U., Pillai, J. A., Sørensen, L., Darkner, Sune, Sommer, Stefan Horst & Nielsen, Mads, Jul 2017, In: Alzheimer's & Dementia. 13, 7, supplement, p. P1356 1 p., P4-225.

    Research output: Contribution to journalConference abstract in journal

  55. Published

    Density-based non-rigid registration of diffusion-weighted images

    Jensen, H. G., Lauze, Francois Bernard, Nielsen, Mads & Darkner, Sune, Apr 2017.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  56. Published

    Streamlet Tractography

    Liptrot, M. G., Darkner, Sune, Feragen, A. & Lauze, Francois Bernard, Apr 2017.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  57. Published

    3D analysis of synaptic vesicle density and distribution after acute foot-shock stress by using serial section transmission electron microscopy

    Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R., Wegener, G., Popoli, M. & Sporring, Jon, 2017, In: Journal of Microscopy. 265, 1, p. 101–110 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  58. Published

    3D estimation of synaptic vesicle distributions in serial section transmission electron microscopy

    Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R., Wegener, G., Popoli, M. & Sporring, Jon, 2017, In: Journal of Microscopy. 265, 1, p. 101–110 1 p.

    Research output: Contribution to journalJournal articlepeer-review

  59. Published

    A statistical model for simultaneous template estimation, bias correction, and registration of 3D brain images

    Pai, A. S. U., Sommer, Stefan Horst, Raket, L. L., Kühnel, L., Darkner, Sune, Sørensen, L. & Nielsen, Mads, 2017, Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging: MICCAI 2016 International Workshops, MCV and BAMBI, Athens, Greece, October 21, 2016, Revised Selected Papers. Müller, H., Kelm, B. M., Arbel, T., Cai, W., Cardoso, M. J., Langs, G., Menze, B., Metaxas, D., Montillo, A., Wells, W. M., Zhang, S., Chung, A. C. S., Jenkinson, M. & Ribbens, A. (eds.). Springer, p. 151-159 9 p. (Lecture notes in computer science, Vol. 10081).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  60. Published

    First-in-man mesenchymal stem cells for radiation-induced xerostomia (MESRIX): study protocol for a randomized controlled trial.

    Grønhøj, C., Jensen, D. H., Glovinski, P. V., mpw981, M., Jensen, A. B., Oliveri, R. S., Specht, Lena, Thomsen, C., Darkner, Sune, Kiss, K., Fischer-Nielsen, A. & von Buchwald, Christian, 2017, In: Trials. 18, 1, 10 p., 108.

    Research output: Contribution to journalJournal articlepeer-review

  61. 2016
  62. Published

    The minimal energetic requirement of sustained awareness after brain injury

    Stender, J., Mortensen, K. N., Thibaut, A., Darkner, Sune, Laureys, S., Gjedde, Albert & Kupers, Ron, 6 Jun 2016, In: Current Biology. 26, 11, p. 1494-1499 6 p.

    Research output: Contribution to journalJournal articlepeer-review

  63. Published

    Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation

    Michalkiewicz, M. D., Pai, A. S. U., Leung, K. K., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L., Sporring, Jon & Nielsen, Mads, 2016, Medical imaging 2016: Image processing. Styner, M. A. & Angelini, E. D. (eds.). SPIE - International Society for Optical Engineering, 6 p. 978406. (Progress in Biomedical Optics and Imaging).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  64. Published

    Deformation-based atrophy computation by surface propagation and its application to Alzheimer’s disease

    Pai, A. S. U., Sporring, Jon, Darkner, Sune, Dam, Erik Bjørnager, Lillholm, Martin, Jørgensen, D., Oh, J., Chen, G., Suhy, J., Sørensen, L. & Nielsen, Mads, 2016, In: SPIE Journal of Medical Imaging. 3, 1, 11 p., 014005.

    Research output: Contribution to journalJournal articlepeer-review

  65. Published

    Finding significantly connected voxels based on histograms of connection strengths

    Kasenburg, N., Pedersen, M. V. & Darkner, Sune, 2016, Medical Imaging 2016: Image Processing. Styner, M. A. & Angelini, E. D. (eds.). SPIE - International Society for Optical Engineering, 7 p. 978431. (Progress in Biomedical Optics and Imaging; No. 39, Vol. 17).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  66. Published

    Kernel bundle diffeomorphic image registration using stationary velocity fields and Wendland basis functions

    Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2016, In: IEEE Transactions on Medical Imaging. 35, 6, p. 1369-1380 12 p.

    Research output: Contribution to journalJournal articlepeer-review

  67. Published

    Structural parcellation of the thalamus using shortest-path tractography

    Kasenburg, N., Darkner, Sune, Hahn, U., Liptrot, M. G. & Feragen, A., 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI). IEEE, p. 559-563 5 p. 7493330

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  68. 2015
  69. Published

    Adaptive time-stepping in dieomorphic image registration with bounded inverse consistency error

    Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015) . INRIA, p. 35-47

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  70. Published

    Adaptive time-stepping in diffeomorphic image registration with bounded inverse consistency error

    Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L. E. B. L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, The 18th International Conference on Medical Image Computing and Computer Assisted Intervention: proceedings. Technische Universität München , p. 35-47 13 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  71. Published

    Automatic correction of dental artifacts in PET/MRI

    Ladefoged, C. N., Andersen, F. L., Keller, S., Beyer, T., Law, I., Højgaard, Liselotte, Darkner, Sune & Lauze, Francois Bernard, 2015, In: SPIE Journal of Medical Imaging. 2, 2, 13 p., 024009.

    Research output: Contribution to journalJournal articlepeer-review

  72. Published

    Comparison of several computational pipelines for atrophy computation in longitudinal Alzheimers studies

    Pai, A. S. U., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L. E. B. L., Sporring, Jon & Nielsen, Mads, 2015. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  73. Published

    Diffeomorphic image registration with automatic time-step adjustment

    Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI). IEEE, p. 1085-1088 4 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  74. Published

    Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel

    Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Medical Imaging 2015: Image Processing. SPIE - International Society for Optical Engineering, 7 p. (Proceedings of S P I E - International Society for Optical Engineering, Vol. 9413).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  75. Published

    Locally orderless registration for diffusion weighted images

    Jensen, H. G., Lauze, Francois Bernard, Nielsen, Mads & Darkner, Sune, 2015, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015: 18th international conference, Munich, Germany, October 5-9, 2015, Proceedings, Part II. Navab, N., Hornegger, J., Wells, W. M. & Frangi, A. F. (eds.). Springer, p. 305-312 8 p. (Lecture notes in computer science, Vol. 9350).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  76. Published

    Multimodal brain extraction from structural MRI using co-registered FDG-PET

    Jensen, H. G., Federspiel, F. V. K., Ptito, Maurice, Nielsen, Mads, Gjedde, Albert, Keller, S. H., Law, Ian, Kupers, Ron & Darkner, Sune, 2015. 12 p.

    Research output: Contribution to conferencePaperResearch

  77. 2014
  78. Published

    Automatic FDG-PET-based tumor and metastatic lymph node segmentation in cervical cancer

    Rodríguez Arbonès, D., Jensen, H. G., Loft, A., af Rosenschöld, P. M., Hansen, A. E., Igel, Christian & Darkner, Sune, 2014, Medical Imaging 2014: Image Processing. Ourselin, S. & Styner, M. A. (eds.). SPIE - International Society for Optical Engineering, 8 p. 903441. (Progress in Biomedical Optics and Imaging; No. 35, Vol. 15).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  79. Published

    Conforming contact manifolds for multibody simulations

    Visseq, V., Bonde, U., Erleben, Kenny & Darkner, Sune, 2014. 2 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  80. Published

    Estimating the thickness of ultra thin sections for electron microscopy by image statistics

    Sporring, Jon, Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R. & Jensen, E. B. V., 2014, 2014 IEEE International Symposium on Biomedical Imaging. IEEE, p. 157-160 4 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  81. Published

    Stepwise inverse consistent Euler’s scheme for diffeomorphic image registration

    Pai, A. S. U., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L., Sporring, Jon & Nielsen, Mads, 2014, Biomedical Image Registration: 6th International Workshop, WBIR 2014, London, UK, July 7-8, 2014. Proceedings. Ourselin, S. & Modat, M. (eds.). Springer, p. 223-230 8 p. (Lecture notes in computer science, Vol. 8545).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  82. Published

    White matter hypointensity growth rate correlates with rate of brain atrophy

    Pai, A. S. U., Sørensen, L., Darkner, Sune, Sporring, Jon, Rostrup, E. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P75-P76 2 p., IC-P-131.

    Research output: Contribution to journalConference abstract in journalpeer-review

  83. Published

    White matter hypointensity growth rate correlates with rate of brain atrophy

    Pai, A. S. U., Sørensen, L., Darkner, Sune, Sporring, Jon, Rostrup, E. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P414 1 p., P1-285.

    Research output: Contribution to journalConference abstract in journalpeer-review

  84. 2013
  85. Published

    Automatic measurement of wrist synovitis from contrast-enhanced MRI: a registration-centered approach

    Mysling, P., Darkner, Sune, Sporring, Jon, Dam, E. & Lillholm, Martin, 2013, Medical Imaging 2013: Image Processing. Ourselin, S. & Haynor, D. R. (eds.). SPIE - International Society for Optical Engineering, 6 p. 86692U. (Progress in Biomedical Optics and Imaging; No. 36, Vol. 14).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  86. Published

    Cube propagation for focal brain atrophy estimation

    Pai, A. S. U., Sørensen, L., Darkner, Sune, Mysling, P., Jørgensen, D. R., Dam, E. B., Lillholm, Martin, Oh, J., Chen, G., Suhy, J., Sporring, Jon & Nielsen, Mads, 2013, 2013 IEEE 10th International Symposium on Biomedical Imaging. IEEE, p. 402-405 4 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  87. Published

    Evaluation of WBAA with registration-based cube propagation for brain atrophy quantification

    Lillholm, Martin, Pai, A. S. U., Sørensen, L., Nielsen, Mads, Sporring, Jon, Darkner, Sune & Dam, E., 2013. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  88. Published

    FDG-PET template MNI152 1mm

    Darkner, Sune, 2013

    Research output: Non-textual formDatasetResearch

  89. Published

    Higher-order momentum distributions and locally affine LDDMM registration

    Sommer, Stefan Horst, Nielsen, Mads, Darkner, Sune & Pennec, X., 2013, In: S I A M Journal on Imaging Sciences. 6, 1, p. 341-367 27 p.

    Research output: Contribution to journalJournal articlepeer-review

  90. Published

    Hippocampal texture predicts one-year hippocampal atrophy in mild cognitively impaired subjects

    Sørensen, L., Pai, A. S. U., Mysling, P., Darkner, Sune, Chen, G., Oh, J., Suhy, J., Igel, Christian & Nielsen, Mads, 2013. 1 p.

    Research output: Contribution to conferencePosterResearchpeer-review

  91. Published

    Localized cerebral atrophy acceleration during Alzheimer’s disease

    Pai, A. S. U., Sørensen, L., Darkner, Sune, Lillholm, Martin, Dam, E. B., Sporring, Jon & Nielsen, Mads, 2013, In: Alzheimer's & Dementia. 9, 4, Supplement, p. P36–P37 2 p., IC-P-059.

    Research output: Contribution to journalConference abstract in journalpeer-review

  92. Published

    Localized cerebral atrophy acceleration during Alzheimer’s disease

    Pai, A. S. U., Sørensen, L., Darkner, Sune, Lillholm, Martin, Dam, E. B., Sporring, Jon & Nielsen, Mads, 2013, In: Alzheimer's & Dementia. 9, 4, Supplement, p. P151 1 p., O1-10-06.

    Research output: Contribution to journalConference abstract in journalpeer-review

  93. Published

    Locally orderless registration

    Darkner, Sune & Sporring, Jon, 2013, In: I E E E Transactions on Pattern Analysis and Machine Intelligence. 35, 6, p. 1437-1450 14 p.

    Research output: Contribution to journalJournal articlepeer-review

  94. 2012
  95. Published

    Data driven constraints for the SVM

    Darkner, Sune & Clemmensen, L. H., 2012, Machine Learning in Medical Imaging: Third International Workshop, MLMI 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 1, 2012, Revised Selected Papers. Wang, F., Shen, D., Yan, P. & Suzuki, K. (eds.). Springer, p. 70-77 8 p. (Lecture notes in computer science, Vol. 7588).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  96. Published

    Evaluation of bias in brain atrophy estimation

    Pai, A. S. U., Darkner, Sune, Sørensen, L., Erleben, L. L., Mysling, P., Sporring, Jon, Dam, E. & Nielsen, Mads, 2012, NIBAD '12: MICCAI 2012 Workshop on Novel Imaging Biomarkers for Alzheimer’s Disease and Related Disorders. Wang, L., Yushkevich, P. & Ourselin, S. (eds.). MICCAI , p. 198-206 9 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  97. Published

    Hippocampal texture provides volume independent information for Alzheimer's diagnosis

    Sørensen, L., Pai, A. S. U., Darkner, Sune, Suhy, J., Oh, J., Chen, G., Igel, Christian & Nielsen, Mads, 2012, In: Alzheimer's & Dementia. 8, 4, Supplement, p. 15 1 p., IC-P-013.

    Research output: Contribution to journalConference abstract in journalpeer-review

  98. Published

    Hippocampal texture provides volume-independent information for Alzheimer's disease diagnosis

    Sørensen, L., Pai, A. S. U., Darkner, Sune, Suhy, J., Oh, J., Chen, G., Igel, Christian & Nielsen, M., 2012, In: Alzheimer's & Dementia. 8, 4, Supplement, p. P162–P163 2 p.

    Research output: Contribution to journalConference abstract in journal

  99. Published

    Jet-based local image descriptors

    Boesen Lindbo Larsen, A., Darkner, Sune, Dahl, A. L. & Steenstrup Pedersen, Kim, 2012, Computer Vision – ECCV 2012: 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part III. Fitzgibbon, A., Lazebnik, S., Perona, P., Sato, Y. & Schmid, C. (eds.). Springer, p. 638-650 13 p. (Lecture notes in computer science, Vol. 7574).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  100. Published

    Locally Orderless Registration

    Darkner, Sune & Sporring, Jon, 2012, arxiv.org, 14 p.

    Research output: Working paperPreprintResearch

  101. Published
  102. 2011
  103. Published

    A hyper elasticity method for interactive virtual design of hearing aids: a parallel method for general non-linear hyper elasticity modeling

    Darkner, Sune & Erleben, Kenny, 2011, In: Visual Computer. 27, 6, p. 645-653 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  104. Published

    Efficient hyperelastic regularization for registration

    Darkner, Sune, Hansen, M. S., Larsen, R. & Hansen, M. F., 2011, Image Analysis: 17th Scandinavian Conference, SCIA 2011, Ystad, Sweden, May 2011. Proceedings. Heyden, A. & Kahl, F. (eds.). Springer, p. 295-305 11 p. (Lecture notes in computer science, Vol. 6688).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  105. Published

    Generalized Partial Volume: an inferior density estimator to Parzen Windows for normalized mutual information

    Darkner, Sune & Sporring, Jon, 2011, Information Processing in Medical Imaging: 22nd International Conference, IPMI 2011, Kloster Irsee, Germany, July 3-8, 2011. Proceedings. Székely, G. & Hahn, H. K. (eds.). Springer, p. 436-447 12 p. (Lecture notes in computer science, Vol. 6801).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  106. Published

    Jacobians for Lebesgue registration for a range of similarity measures

    Sporring, Jon & Darkner, Sune, 2011, Department of Computer Science, University of Copenhagen. 8 p. (Koebenhavns Universitet. Datalogisk Institut. Rapport; No. 04/2011).

    Research output: Book/ReportReport

  107. Published

    The cartilage bone junction and its implications for deep canal hearing instrument fittings

    Nielsen, C. & Darkner, Sune, 2011, In: Hearing Journal. 64, 3, p. 35-42 4 p.

    Research output: Contribution to journalJournal articlepeer-review

ID: 18038443