Sune Darkner
Associate Professor
Image Analysis, Computational Modelling and Geometry
Universitetsparken 1
2100 København Ø
- 2024
- Published
An Automatic DWI/FLAIR Mismatch Assessment of Stroke Patients
Johansen, Jacob, Offersen, C. M., Carlsen, Jonathan Frederik, Ingala, S., Hansen, Adam Espe, Nielsen, Michael Bachmann, Darkner, Sune & Pai, A., 2024, In: Diagnostics. 14, 1, 12 p., 69.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
A hybrid approach to full-scale reconstruction of renal arterial network
Xu, Peidi, von Holstein-Rathlou, Niels-Henrik, Søgaard, S. B., Gundlach, C., Sorensen, Charlotte Mehlin, Erleben, Kenny, Sosnovtseva, Olga & Darkner, Sune, 9 May 2023, In: Scientific Reports. 13, 1, 15 p., 7569.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Collision-constrained deformable image registration framework for discontinuity management
Alscher, Thomas Michael, Erleben, Kenny & Darkner, Sune, 2023, In: PLoS ONE. 18, 8, 15 p., e0290243.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deep Learning-Assisted Localisation of Nanoparticles in synthetically generated two-photon microscopy images
Netterstrøm, R., Kutuzov, Nikolay, Darkner, Sune, Pallesen, M. J., Lauritzen, Martin, Erleben, Kenny & Lauze, Francois Bernard, 2023, arXiv.org, 1 p.Research output: Working paper › Preprint › Research
- Published
Deep-learning-based segmentation of individual tooth and bone with periodontal ligament interface details for simulation purposes
Xu, Peidi, Gholamalizadeh, T., nsv780, nsv780, Darkner, Sune & Erleben, Kenny, 2023, In: IEEE Access. 11, p. 102460-102470Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extremely Weakly-Supervised Blood Vessel Segmentation with Physiologically Based Synthesis and Domain Adaptation
Xu, Peidi, Lee, B., Sosnovtseva, Olga, Sorensen, Charlotte Mehlin, Erleben, Kenny & Darkner, Sune, 2023, Medical Image Learning with Limited and Noisy Data - 2nd International Workshop, MILLanD 2023, Held in Conjunction with MICCAI 2023, Proceedings. Xue, Z., Antani, S., Zamzmi, G., Yang, F., Rajaraman, S., Liang, Z., Huang, S. X. & Linguraru, M. G. (eds.). Springer, p. 191-201 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 14307 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Performance and Agreement When Annotating Chest X-ray Text Reports - A Preliminary Step in the Development of a Deep Learning-Based Prioritization and Detection System
Li, D., Pehrson, Lea Marie, Bonnevie, R., Fraccaro, M., Thrane, J., Tøttrup, L., Lauridsen, C. A., Balaganeshan, Sedrah Butt, Jankovic, J., Andersen, T. T., Mayar, A., Hansen, Kristoffer Lindskov, Carlsen, Jonathan Frederik, Darkner, Sune & Nielsen, Michael Bachmann, 2023, In: Diagnostics. 13, 6, 24 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pseudo-Label Guided Image Synthesis for Semi-Supervised COVID-19 Pneumonia Infection Segmentation
Lyu, F., Ye, M., Carlsen, J. F., Erleben, Kenny, Darkner, Sune & Yuen, P. C., 2023, In: IEEE Transactions on Medical Imaging. 42, 3, p. 797-809Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
cRedAnno+: Annotation Exploitation In Self-Explanatory Lung Nodule Diagnosis
Lu, J., Yin, C., Erleben, Kenny, Nielsen, Michael Bachmann & Darkner, Sune, 2023, 2023 IEEE International Symposium on Biomedical Imaging, ISBI 2023. IEEE Computer Society Press, (Proceedings - International Symposium on Biomedical Imaging, Vol. 2023-April).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- 2022
- Published
Open-Full-Jaw: An open-access dataset and pipeline for finite element models of human jaw
Gholamalizadeh, T., nsv780, nsv780, Ferguson, Z., Schneider, T., Panozzo, D., Darkner, Sune, Makaremi, M., Chan, F., Lempel Søndergaard, P. & Erleben, Kenny, 1 Sep 2022, In: Computer Methods and Programs in Biomedicine. 224, 17 p., 107009.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Accuracy and consistency of intensity-based deformable image registration in 4DCT for tumor motion estimation in liver radiotherapy planning
Tascon-Vidarte, J. D., Stick, L. B., Josipovic, Mirjana, Risum, S., Jomier, J., Erleben, Kenny, Vogelius, Ivan R. & Darkner, Sune, Jul 2022, In: PLoS ONE. 17, 7 July, p. 1-15 e0271064.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reconstructing Binary Signals from Local Histograms
Sporring, Jon & Darkner, Sune, 21 Mar 2022, In: Entropy. 24, 3, p. 1-11 433.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Direct Geometry Processing Cartilage Generation Method Using Segmented Bone Models from Datasets with Poor Cartilage Visibility
nsv780, nsv780, Nielsen, M. K., Tascon Vidarte, J. D., Darkner, Sune & Erleben, Kenny, 2022, Computational Biomechanics for Medicine: Towards Translation and Better Patient Outcomes. Springer, p. 155.169Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
An algebra for local histograms
Sporring, Jon & Darkner, Sune, 2022, In: Frontiers in Computer Science. 4, p. 1-9 939563.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Auto-segmentation of Hip Joints Using MultiPlanar UNet with Transfer Learning
Xu, Peidi, nsv780, nsv780, Gholamalizadeh, T., Nielsen, Michael Bachmann, Erleben, Kenny & Darkner, Sune, 2022, Medical Image Learning with Limited and Noisy Data: First International Workshop, MILLanD 2022 Held in Conjunction with MICCAI 2022 Singapore, September 22, 2022 Proceedings. Zamzmi, G., Antani, S., Rajaraman, S., Xue, Z., Bagci, U. & Linguraru, M. G. (eds.). Springer Science and Business Media Deutschland GmbH, p. 153-162 10 p. (Medical Image Learning with Limited and Noisy Data, Vol. 13559).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Bundle geodesic convolutional neural network for diffusion-weighted imaging segmentation
Liu, Renfei, Lauze, Francois Bernard, Erleben, Kenny, Berg, Rune W. & Darkner, Sune, 2022, In: Journal of Medical Imaging. 9, 6, 14 p., 064002.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast Vortex Particle Method for Fluid-Character Interaction
Meldgaard, A., Darkner, Sune & Erleben, Kenny, 2022, In: OpenReview.net. 2022, 7 p.Research output: Contribution to journal › Conference article › Research
- Published
Information-Theoretic Registration with Explicit Reorientation of Diffusion-Weighted Images
Jensen, H. G., Lauze, Francois Bernard & Darkner, Sune, 2022, In: Journal of Mathematical Imaging and Vision. 64, p. 1-16Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inter- and Intra-Observer Agreement When Using a Diagnostic Labeling Scheme for Annotating Findings on Chest X-rays—An Early Step in the Development of a Deep Learning-Based Decision Support System
Li, D., Pehrson, Lea Marie, Tøttrup, L., Fraccaro, M., Bonnevie, R., Thrane, J., Sørensen, P. J., Rykkje, A., Andersen, T. T., Steglich-Arnholm, H., Stærk, D. M. R., Borgwardt, L., Hansen, Kristoffer Lindskov, Darkner, Sune, Carlsen, Jonathan Frederik & Nielsen, Michael Bachmann, 2022, In: Diagnostics. 12, 12, 3112.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
LibHip: An open-access hip joint model repository suitable for finite element method simulation
nsv780, nsv780, Gholamalizadeh, T., Ferguson, Z., Schneider, T., Nielsen, Michael Bachmann, Panozzo, D., Darkner, Sune & Erleben, Kenny, 2022, In: Computer Methods and Programs in Biomedicine. 226, 14 p., 107140.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reducing Annotation Need in Self-explanatory Models for Lung Nodule Diagnosis
Lu, J., Yin, C., Krause, Oswin, Erleben, Kenny, Nielsen, Michael Bachmann & Darkner, Sune, 2022, Interpretability of Machine Intelligence in Medical Image Computing. Reyes, M., Abreu, PH. & Cardoso, J. (eds.). Springer, p. 33-43 (Lecture Notes in Computer Science, Vol. 13611).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Revisiting Transformer-based Models for Long Document Classification
Dai, X., Chalkidis, Ilias, Darkner, Sune & Elliott, Desmond, 2022, Findings of the Association for Computational Linguistics: EMNLP 2022. Association for Computational Linguistics, p. 7212–7230Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
RootPainter3D: Interactive-machine-learning enables rapid and accurate contouring for radiotherapy
Smith, Abraham George, Petersen, Jens, Terrones-Campos, C., Berthelsen, A. K., Forbes, N. J., Darkner, Sune, Specht, Lena & Vogelius, I. R., 2022, In: Medical Physics. 49, 1, p. 461-473Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
A framework for voxel-based assessment of biological effect after proton radiotherapy in pediatric brain cancer patients using multi-modal imaging
Skaarup, M., Lundemann, M. J., Darkner, Sune, Jorgensen, M., Marner, Lisbeth, Mirkovic, D., Grosshans, D., Peeler, C., Mohan, R., Vogelius, Ivan R. & Appelt, A., 10 Jun 2021, In: Medical Physics. 48, 7, 12 p., 4110-4121.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
U-Sleep: resilient high-frequency sleep staging
Perslev, Mathias, Darkner, Sune, Kempfner, L., Nikolic, M., Jennum, Poul & Igel, Christian, 15 Apr 2021, In: npj Digital Medicine. 4, 1, 12 p., 72.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A multi-patient analysis of the center of rotation trajectories using finite element models of the human mandible
Gholamalizadeh, T., Darkner, Sune, Søndergaard, P. L. & Erleben, Kenny, 2021, In: PLoS ONE. 16, 11 November, 16 p., e0259794.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bundle Geodesic Convolutional Neural Network for DWI Segmentation from Single Scan Learning
Liu, Renfei, Lauze, Francois Bernard, Erleben, Kenny & Darkner, Sune, 2021, Computational Diffusion MRI - 12th International Workshop, CDMRI 2021, Held in Conjunction with MICCAI 2021, Proceedings. Cetin-Karayumak, S., Christiaens, D., Figini, M., Guevara, P., Gyori, N., Nath, V. & Pieciak, T. (eds.). Springer, p. 121-132 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 13006 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Cine-MRI Simulation to Evaluate Tumor Tracking
Tascón-Vidarte, J. D., Wahlstedt, I., Jomier, J., Erleben, Kenny, Vogelius, Ivan R. & Darkner, Sune, 2021, Simulation and Synthesis in Medical Imaging - 6th International Workshop, SASHIMI 2021, Held in Conjunction with MICCAI 2021, Proceedings. Svoboda, D., Burgos, N., Wolterink, J. M. & Zhao, C. (eds.). Springer, p. 131-141 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 12965 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Contact modeling from images using cut finite element solvers
Claus, S., Kerfriden, P., nsv780, nsv780, Darkner, Sune, Erleben, Kenny & Wong, Christian, 2021, In: Advanced Modeling and Simulation in Engineering Sciences. 8, 1, p. 1-23 13.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
First Order Locally Orderless Registration
Darkner, Sune, Vidarte, J. D. T. & Lauze, Francois Bernard, 2021, Scale Space and Variational Methods in Computer Vision - 8th International Conference, SSVM 2021, Proceedings. Elmoataz, A., Fadili, J., Quéau, Y., Rabin, J. & Simon, L. (eds.). Springer, p. 177-188 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 12679 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Global Position Prediction for Interactive Motion Capture
Schreiner, Paul, Perepichka, M., Lewis, H., Darkner, Sune, Kry, P. G., Erleben, Kenny & Zordan, V. B., 2021, In: Proceedings of the ACM on Computer Graphics and Interactive Techniques. 4, 3, p. 1-16 3479985.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
OpenJaw Dataset
Gholamalizadeh, T., Darkner, Sune, Søndergaard, P. & Erleben, Kenny, 2021Research output: Non-textual form › Dataset › Research
- Published
The added effect of artificial intelligence on physicians’ performance in detecting thoracic pathologies on CT and chest X-ray: A systematic review
Li, D., Pehrson, Lea Marie, Lauridsen, C. A., Tøttrup, L., Fraccaro, M., Elliott, Desmond, Zajac, Hubert Dariusz, Darkner, Sune, Carlsen, Jonathan Frederik & Nielsen, Michael Bachmann, 2021, In: Diagnostics. 11, 12, 17 p., 2206.Research output: Contribution to journal › Review › Research › peer-review
- 2020
- Published
- Published
Mandibular Teeth Movement Variations in Tipping Scenario: A Finite Element Study on Several Patients
Gholamalizadeh, T., Darkner, Sune, Cattaneo, P. M., Søndergaard, P. & Erleben, Kenny, 2020. 10 p.Research output: Contribution to conference › Paper › Research
- Published
Restoring drifted electron microscope volumes using synaptic vesicles at sub-pixel accuracy
Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 2020, In: Communications Biology. 3, 1, 7 p., ´81.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
U-Time: A Fully Convolutional Network for Time Series Segmentation Applied to Sleep Staging
Perslev, Mathias, Hejselbak Jensen, M., Darkner, Sune, Jørgen Jennum, P. & Igel, Christian, 1 Oct 2019, Advances in Neural Information Processing Systems 32 (NIPS 2019). NIPS Proceedings, Vol. 32. p. 4415-4426Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
- Published
Data Driven Inverse Kinematics of Soft Robots using Local Models
Holsten, F., Engell-norregard, M. P., Darkner, Sune & Erleben, Kenny, 2019, 2019 International Conference on Robotics and Automation (ICRA). IEEE, p. 6251-6257Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Deterministic Group Tractography with Local Uncertainty Quantification
Holm, Andreas Nugaard, Feragen, A., Dela Haije, T. & Darkner, Sune, 2019, Computational Diffusion: International MICCAI Workshop, Granada,. Bonet-Carne, E., Grussu, F., Ning, L., Sepehrband, F. & Tax, C. M. W. (eds.). 226249 ed. Springer, p. 377-386 (Mathematics and Visualization).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
TopAwaRe: Topology-Aware Registration
Nielsen, R. K., Darkner, Sune & Feragen, A., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer VS, p. 364-372 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11765 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- 2018
- Published
Safety and Efficacy of Mesenchymal Stem Cells for Radiation-Induced Xerostomia: A Randomized, Placebo-Controlled Phase 1/2 Trial (MESRIX)
Grønhøj, C., Jensen, D. H., Vester-Glowinski, Peter Viktor, Jensen, S. B., Bardow, A., Oliveri, R. S., Fog, L. M., Specht, Lena, Thomsen, C., Darkner, Sune, Jensen, M., Müller, V., Kiss, K., Agander, T., Andersen, E., Fischer-Nielsen, A. & von Buchwald, Christian, 1 Jul 2018, In: International Journal of Radiation Oncology, Biology, Physics. 101, 3, p. 581-592 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Brain Segmentation in Rodent MR-Images Using Convolutional Neural Networks
Sigurdsson, B., Darkner, Sune, Sommer, Stefan Horst, Mortensen, K. N., Sanggaard, S., Kostrikov, S. & Nedergaard, Maiken, 2018.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Collocation for diffeomorphic deformations in medical image registration
Darkner, Sune, Pai, A. S. U., Liptrot, M. G. & Sporring, Jon, 2018, In: I E E E Transactions on Pattern Analysis and Machine Intelligence. 40, 7, p. 1570-1583Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Hippocampal texture predicts rate of cognitive decline in mild cognitive impairment
Pai, A. S. U., Pillai, J. A., Sørensen, L., Darkner, Sune, Sommer, Stefan Horst & Nielsen, Mads, Jul 2017, In: Alzheimer's & Dementia. 13, 7, supplement, p. P1356 1 p., P4-225.Research output: Contribution to journal › Conference abstract in journal › Research
- Published
Density-based non-rigid registration of diffusion-weighted images
Jensen, H. G., Lauze, Francois Bernard, Nielsen, Mads & Darkner, Sune, Apr 2017.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Streamlet Tractography
Liptrot, M. G., Darkner, Sune, Feragen, A. & Lauze, Francois Bernard, Apr 2017.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
3D analysis of synaptic vesicle density and distribution after acute foot-shock stress by using serial section transmission electron microscopy
Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R., Wegener, G., Popoli, M. & Sporring, Jon, 2017, In: Journal of Microscopy. 265, 1, p. 101–110 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
3D estimation of synaptic vesicle distributions in serial section transmission electron microscopy
Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R., Wegener, G., Popoli, M. & Sporring, Jon, 2017, In: Journal of Microscopy. 265, 1, p. 101–110 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 18038443
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Locally orderless registration
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Jet-based local image descriptors
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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FDG-PET template MNI152 1mm
Research output: Non-textual form › Dataset › Research
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