Raghavendra Selvan
Tenure Track Assistant Professor
Machine Learning
Universitetsparken 1
2100 København Ø
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Ten recommendations for reducing the carbon footprint of research computing in human neuroimaging
Souter, N. E., Lannelongue, L., Samuel, G., Racey, C., Colling, L. J., Bhagwat, N., Selvan, Raghav & Rae, C. L., 2023, In: Imaging Neuroscience. 1, p. 1-15Research output: Contribution to journal › Journal article › Research › peer-review
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Segmentation of roots in soil with U-Net
Smith, Abraham George, Petersen, Jens, Selvan, Raghav & Rasmussen, Camilla Ruø, 2020, In: Plant Methods. 16, p. 1-15 13.Research output: Contribution to journal › Journal article › Research › peer-review
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Tensor Networks for Medical Image Classification
Selvan, Raghav & Dam, Erik Bjørnager, 21 Apr 2020, International Conference on Medical Imaging with Deep Learning, MIDL 2020, 6-8 July 2020, Montréal, QC, Canada. PMLR, p. 721-732 (Proceedings of Machine Learning Research, Vol. 121).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Patch-based Medical Image Segmentation using Matrix Product State Tensor Networks
Selvan, Raghav, Dam, Erik Bjørnager, Flensborg, S. A. & Petersen, Jens, 2022, In: The Journal of Machine Learning for Biomedical Imaging. 2022, p. 1-24 005.Research output: Contribution to journal › Journal article › Research › peer-review
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Operating Critical Machine Learning Models in Resource Constrained Regimes
Selvan, Raghav, Schön, Julian Elisha & Dam, Erik Bjørnager, 2024, Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 Workshops: MTSAIL 2023, LEAF 2023, AI4Treat 2023, MMMI 2023, REMIA 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8–12, 2023, Proceedings. Springer, p. 325-335 Chapter 29. (Lecture Notes in Computer Science, Vol. 14394).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Graph Refinement based Airway Extraction using Mean-Field Networks and Graph Neural Networks
Selvan, Raghav, Kipf, T., Welling, M., Juarez, A. G., Pedersen, J. H., Petersen, Jens & de Bruijne, Marleen, 2020, In: Medical Image Analysis. 64, 12 p., 101751.Research output: Contribution to journal › Journal article › Research › peer-review
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Uncertainty quantification in medical image segmentation with normalizing flows
Selvan, Raghav, Faye, F., Middleton, Jon Anthony & Pai, A., 2020, Machine Learning in Medical Imaging: 11th International Workshop, MLMI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4, 2020, Proceedings. Springer, 12 p. (Lecture Notes in Computer Science, Vol. 12436).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Extracting tree structures in CT data by tracking multiple statistically ranked hypotheses
Selvan, Raghav, Petersen, Jens, Pedersen, J. H. & de Bruijne, Marleen, 18 Oct 2019, In: Medical Physics. 46, 10, p. 4431-4440Research output: Contribution to journal › Journal article › Research › peer-review
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Carbon Footprint of Selecting and Training Deep Learning Models for Medical Image Analysis
Selvan, Raghav, Bhagwat, N., Anthony, L. F. W., Kanding, B. & Dam, Erik Bjørnager, 2022, Medical Image Computing and Computer Assisted Intervention – MICCAI 2022: 25th International Conference Singapore, September 18–22, 2022 Proceedings, Part V. Springer, p. 506–516 (Lecture Notes in Computer Science, Vol. 13435).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Locally orderless tensor networks for classifying two- and three-dimensional medical images
Selvan, Raghav, Ørting, S. & Dam, Erik Bjørnager, 2021, In: The Journal of Machine Learning for Biomedical Imaging. 5, SI, p. 1-21Research output: Contribution to journal › Conference article › Research › peer-review
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Segmenting Two-Dimensional Structures with Strided Tensor Networks
Selvan, Raghav, Dam, Erik Bjørnager & Petersen, Jens, 2021, Information Processing in Medical Imaging - 27th International Conference, IPMI 2021, Proceedings. Feragen, A., Sommer, S., Schnabel, J. & Nielsen, M. (eds.). Springer, p. 401-414 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 12729 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Multi-layered tensor networks for image classification
Selvan, Raghav, Ørting, S. & Dam, Erik Bjørnager, 2020. 6 p.Research output: Contribution to conference › Paper › Research
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Carbon footprint driven deep learning model selection for medical imaging
Selvan, Raghav, 2021, p. 1-3.Research output: Contribution to conference › Paper › Research › peer-review
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Lung Segmentation from Chest X-rays using Variational Data Imputation
Selvan, Raghav, Dam, Erik Bjørnager, Rischel, S., Sheng, K., Nielsen, Mads & Pai, A., 20 May 2020, In: OpenReview.net. 7 p.Research output: Contribution to journal › Conference article › Research
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Interpreting Latent Spaces of Generative Models for Medical Images using Unsupervised Methods
Schön, Julian Elisha, Selvan, Raghav & Petersen, Jens, 2022, Deep Generative Models: Second MICCAI Workshop, DGM4MICCAI 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings. Springer, p. 24-33 (Lecture Notes in Computer Science, Vol. 13609).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Dynamic β-VAEs for quantifying biodiversity by clustering optically recorded insect signals
Rydhmer, Klas Karl Gustav & Selvan, Raghav, 2021, In: Ecological Informatics. 66, 9 p., 101456.Research output: Contribution to journal › Journal article › Research › peer-review
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A Batch Algorithm for Estimating Trajectories of Point Targets Using Expectation Maximization
Rahmathullah, A. S., Selvan, Raghav & Svensson, L., 15 Sep 2016, In: IEEE Transactions on Signal Processing. 64, 18, p. 4792-4804 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A batch algorithm for estimating trajectories of point targets using expectation maximization
Rahmathullah, A., Selvan, Raghav & Svensson, L., 2016, In: IEEE Transactions on Signal Processing. 64, 18, p. 4792-4804 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Extraction of Airways with Probabilistic State-Space Models and Bayesian Smoothing
Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2017, Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics: First International Workshop, GRAIL 2017, 6th International Workshop, MFCA 2017, and Third International Workshop, MICGen 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. Cardoso, M. J., Arbel, T., Ferrante, E., Pennec, X., Dalca, A. V., Parisot, S., Joshi, S., Batmanghelich, N. K., Sotiras, A., Nielsen, M., Sabuncu, M. R., Fletcher, T., Shen, L., Durrleman, S. & Sommer, S. (eds.). Springer, p. 53-63 (Lecture notes in computer science, Vol. 10551).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Extraction of airway trees using multiple hypothesis tracking and template matching
Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2016, The Sixth International Workshop on Pulmonary Image Analysis: Athens, Greece - October 21, 2016. Beichel, R. R., Farahani, K., Jacobs, C., Kabus, S., Kiraly, A. P., Kuhnigk, J-M., McClelland, J. R., Mori, K., Petersen, J. & Rit, S. (eds.). Create Space Independent Publishing Platform, p. 43-54 12 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Bayesian tracking of multiple point targets using expectation maximization
Selvan, Raghav, Aug 2015, Chalmers tekniska högskola. 110 p.Research output: Book/Report › Report › Research
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Extraction of Airways using Graph Neural Networks
Selvan, Raghav, Kipf, T., Welling, M., Pedersen, J. J. H., Petersen, Jens & de Bruijne, Marleen, 2018. 3 p.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
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Mean Field Network Based Graph Refinement with Application to Airway Tree Extraction
Selvan, Raghav, Welling, M., Pedersen, J. J. H., Petersen, Jens & de Bruijne, Marleen, 2018, Medical Image Computingand Computer AssistedIntervention – MICCAI 2018: 21st International Conference, Granada, Spain, September 16–20, 2018, Proceedings, Part II. Frangi, A. F., Schnabel, J. A., Davatzikos, C., Alberola-López, C. & Fichtinger, G. (eds.). Springer, p. 750-758 (Lecture notes in computer science, Vol. 11071).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Extraction of Airways from Volumetric Data
Selvan, Raghav, 2018, Department of Computer Science, Faculty of Science, University of Copenhagen. 94 p.Research output: Book/Report › Ph.D. thesis › Research
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Increasing Accuracy of Optimal Surfaces Using Min-marginal Energies
Petersen, Jens, Arias-Lorza, A. M., Selvan, Raghav, Bos, D., van der Lugt, A., Pedersen, J. H., Nielsen, Mads & de Bruijne, Marleen, 1 Jan 2019, In: IEEE Transactions on Medical Imaging. 38, 7, p. 1559-1568 8599009.Research output: Contribution to journal › Journal article › Research › peer-review
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Detection of foraging behavior from accelerometer data using U-Net type convolutional networks
Ngô, M. C., Selvan, Raghav, Tervo, O., Heide-Jørgensen, M. P. & Ditlevsen, Susanne, 6 Jan 2021, In: Ecological Informatics. 67, 12 p., 101275.Research output: Contribution to journal › Journal article › Research › peer-review
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Stabilization of V1 interneuron-motor neuron connectivity ameliorates motor phenotype in a mouse model of ALS
Mora, S., Friis, R. V. H., Stuckert, A., Noes-Holt, Gith, Montañana-Rosell, Roser, Sørensen, Andreas Toft, Selvan, Raghav & Allodi, Ilary, 2022, 10 p. (bioRxiv).Research output: Working paper › Preprint
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Predicting lake bathymetry from the topography of the surrounding terrain using deep learning
Martinsen, K. T., Sand-Jensen, Kaj & Selvan, Raghav, 2023, In: Limnology and Oceanography: Methods. 21, 10, p. 625-636Research output: Contribution to journal › Journal article › Research › peer-review
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DeepStruc: towards structure solution from pair distribution function data using deep generative models
Kjær, E. T. S., Anker, Andy Sode, Weng, M. N., Billinge, S. J. L., Selvan, Raghav & Jensen, Kirsten Marie Ørnsbjerg, 2023, In: Digital Discovery. 2, 1, p. 69-80 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Deep ensemble model for segmenting microscopy images in the presence of limited labeled data
Kaminski, J. M., Allodi, I., Montañana-Rosell, Roser, Selvan, Raghav & Kiehn, O., 2021, International Conference on Medical Imaging with Deep Learning, MIDL (Short Paper). 3 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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A joint 3D UNet-Graph Neural Network-based method for Airway Segmentation from chest CTs
Juarez, A. G., Selvan, Raghav, Saghir, Zaigham & de Bruijne, Marleen, 22 Aug 2019, Machine Learning in Medical Imaging: 10th International Workshop, MLMI 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13, 2019, Proceedings. Springer, p. 583-591 (Lecture Notes in Computer Science, Vol. LNCS 11861).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Developing and validating COVID-19 adverse outcome risk prediction models from a bi-national European cohort of 5594 patients
Jimenez-Solem, E., Petersen, T. S., Hansen, C., Hansen, C., Lioma, C., Igel, C., Boomsma, W., Krause, O., Lorenzen, S., Selvan, R., Petersen, J., Nyeland, M. E., Ankarfeldt, M. Z., Virenfeldt, G. M., Winther-Jensen, M., Linneberg, A., Ghazi, M. M., Detlefsen, N., Lauritzen, A. D., Smith, A. G. & 15 others, , 2021, In: Scientific Reports. 11, 1, 12 p., 3246.Research output: Contribution to journal › Journal article › Research › peer-review
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Pedunculopontine Chx10 + neurons control global motor arrest in mice.
Goñi Erro, Haizea, Selvan, Raghav, Caggiano, V., Leiras, Roberto & Kiehn, Ole, 2023, In: Nature Neuroscience. 26, p. 1516–1528 43 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Automatic airway segmentation from computed tomography using robust and efficient 3-D convolutional neural networks
Garcia-uceda, A., Selvan, Raghav, Saghir, Zaigham, Tiddens, H. A. W. M. & de Bruijne, Marleen, 2021, In: Scientific Reports. 11, 1, 15 p., 16001.Research output: Contribution to journal › Journal article › Research › peer-review
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Efficient Self-Supervision using Patch-based Contrastive Learning for Histopathology Image Segmentation
Boserup, Nicklas & Selvan, Raghav, 2023, Proceedings of the Northern Lights Deep Learning Workshop 2023. Septentrio Academic Publishing, 8 p. (Proceedings of the Northern Lights Deep Learning Workshop, Vol. 4).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Carbontracker: Tracking and Predicting the Carbon Footprint of Training Deep Learning Models
Anthony, L. F. W., Kanding, B. & Selvan, Raghav, 2020. 11 p.Research output: Contribution to conference › Paper › Research › peer-review
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Identifying Partial Mouse Brain Microscopy Images from the Allen Reference Atlas Using a Contrastively Learned Semantic Space
Antanavicius, J., Leiras, Roberto & Selvan, Raghav, 2022, Biomedical Image Registration - 10th International Workshop, WBIR 2022, Proceedings. Hering, A., Schnabel, J., Zhang, M., Ferrante, E., Heinrich, M. & Rueckert, D. (eds.). 1 ed. Springer Science and Business Media Deutschland GmbH, p. 166-176 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 13386 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Characterising the Atomic Structure of Mono-Metallic Nanoparticles from X-Ray Scattering Data Using Conditional Generative Models
Anker, Andy Sode, Kjær, E. T. S., Dam, Erik Bjørnager, Billinge, S. J. L., Jensen, K. M. Ø. & Selvan, Raghav, 17 Jul 2020Research output: Other contribution › Research
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Machine learning for analysis of experimental scattering and spectroscopy data in materials chemistry
Anker, Andy Sode, Butler, K. T., Selvan, Raghav & Jensen, Kirsten Marie Ørnsbjerg, 2023, In: Chemical Science. p. 14003–14019 17 p.Research output: Contribution to journal › Review › Research › peer-review
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Extracting structural motifs from pair distribution function data of nanostructures using explainable machine learning
Anker, Andy Sode, Kjaer, E. T. S., Juelsholt, M., Christiansen, T. L., Skjaervo, S. L., Jorgensen, M. R. V., Kantor, I., Sorensen, D. R., Billinge, S. J. L., Selvan, Raghav & Jensen, Kirsten Marie Ørnsbjerg, 1 Oct 2022, In: npj Computational Materials. 8, 1, 11 p., 213.Research output: Contribution to journal › Journal article › Research › peer-review
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Locomotor deficits in a mouse model of ALS are paralleled by loss of V1-interneuron connections onto fast motor neurons
Allodi, Ilary, Montañana-Rosell, Roser, Selvan, Raghav, Löw, P. & Kiehn, Ole, 31 May 2021, In: Nature Communications. 12, 1, 17 p., 3251.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 144763853
Most downloads
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481
downloads
Extraction of Airways from Volumetric Data
Research output: Book/Report › Ph.D. thesis › Research
Published -
246
downloads
Developing and validating COVID-19 adverse outcome risk prediction models from a bi-national European cohort of 5594 patients
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
189
downloads
Segmentation of roots in soil with U-Net
Research output: Contribution to journal › Journal article › Research › peer-review
Published