Jens Petersen

Jens Petersen

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ORCID: 0000-0003-0138-0693

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  1. Udgivet

    Optimal graph based segmentation using flow lines with application to airway wall segmentation

    Petersen, Jens, Nielsen, Mads, Lo, P. C. P., Saghir, Z., Dirksen, A. & de Bruijne, Marleen, 2011, Information Processing in Medical Imaging: 22nd International Conference, IPMI 2011, Kloster Irsee, Germany, July 3-8, 2011. Proceedings. Székely, G. & Hahn, H. K. (red.). Springer, s. 49-60 12 s. (Lecture notes in computer science, Bind 6801).

    Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt

  2. Udgivet

    Optimal surface segmentation using flow lines to quantify airway abnormalities in chronic obstructive pulmonary disease

    Petersen, Jens, Nielsen, Mads, Lo, P. C. P., Nordenmark, L. H., Pedersen, J. J. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2014, I: Medical Image Analysis. 18, 3, s. 531-541 11 s.

    Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

  3. Udgivet

    An automatic system for segmentation, matching, anatomical labeling and measurement of airways from CT images

    Petersen, Jens, Feragen, A., Owen, M., Lo, P., Wille, M. M. W., Thomsen, L. H., Dirksen, A. & de Bruijne, Marleen, 2013. 1 s.

    Publikation: Konferencebidrag › Poster › Forskning › fagfællebedømt

  4. Udgivet

    Graph cut-based segmentation

    Petersen, Jens, Oguz, I. & de Bruijne, Marleen, 2023, Medical Image Analysis. Academic Press, s. 247-273

    Publikation: Bidrag til bog/antologi/rapport › Bidrag til bog/antologi › Forskning › fagfællebedømt

  5. Udgivet

    Opfront: mesh

    Petersen, Jens, 16 aug. 2015

    Publikation: Bidrag der ikke har en tekstform › Softwareprogram › Forskning

  6. Udgivet

    Effect of inspiration on airway dimensions measured in maximal inspiration CT images of subjects without airflow limitation

    Petersen, Jens, Wille, M. M. W., Raket, L. L., Feragen, A., Pedersen, J. H., Nielsen, Mads, Dirksen, A. & de Bruijne, Marleen, 2014, I: European Radiology. 24, 9, s. 2319-2325 7 s.

    Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

  7. Udgivet

    Quantitative airway analysis in longitudinal studies using groupwise registration and 4D optimal surfaces

    Petersen, Jens, Modat, M., Cardoso, M. J., Dirksen, A., Ourselin, S. & de Bruijne, Marleen, 2013, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013: 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part II. Mori, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (red.). Springer, Bind 2. s. 287-294 8 s. (Lecture notes in computer science, Bind 8150).

    Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt

  8. Udgivet

    Analysis of airways in computed tomography

    Petersen, Jens, 2014, Department of Computer Science, Faculty of Science, University of Copenhagen. 135 s.

    Publikation: Bog/antologi/afhandling/rapport › Ph.d.-afhandling › Forskning

  9. Udgivet

    Quantitative analysis of airway abnormalities in CT

    Petersen, Jens, Lo, P. C. P., Nielsen, Mads, Edula, G., Ashraf, H., Dirksen, A. & de Bruijne, Marleen, 2010, Medical Imaging 2010: computer-aided Diagnosis. Karssemeijer, N. & Summers, R. M. (red.). SPIE - International Society for Optical Engineering, 12 s. 76241S. (Progress in Biomedical Optics and Imaging; Nr. 34, Bind 11).

    Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt

  10. Udgivet

    Increasing Accuracy of Optimal Surfaces Using Min-marginal Energies

    Petersen, Jens, Arias-Lorza, A. M., Selvan, Raghav, Bos, D., van der Lugt, A., Pedersen, J. H., Nielsen, Mads & de Bruijne, Marleen, 1 jan. 2019, I: IEEE Transactions on Medical Imaging. 38, 7, s. 1559-1568 8599009.

    Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

  11. Udgivet

    Opfront: optimal front segmentation of images

    Petersen, Jens, 2014

    Publikation: Bidrag der ikke har en tekstform › Softwareprogram › Forskning

  12. Udgivet

    Longitudinal analysis of airways using registration

    Petersen, Jens, Gorbunova, V., Nielsen, Mads, Dirksen, A., Lo, P. C. P. & de Bruijne, Marleen, 2011, The Fourth International Workshop on Pulmonary Image Analysis. Beichel, R., de Bruijne, M., van Ginneken, B., Kabus, S., Kiraly, A., Kuhnigk, J-M., McClelland, J., Mori, K., van Rikxoort, E. & Rit, S. (red.). CreateSpace Independent Publishing Platform , s. 11-22 12 s.

    Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt

  13. Udgivet

    The effect of inspiration on airway dimensions measured in CT images from the Danish Lung Cancer Screening Trial

    Petersen, Jens, Wille, M., Thomsen, L., Feragen, A., Dirksen, A. & de Bruijne, Marleen, 2013, I: Insights into Imaging. 4, Supplement 1, s. 183 1 s., B-0163.

    Publikation: Bidrag til tidsskrift › Konferenceabstrakt i tidsskrift › Forskning › fagfællebedømt

  14. Udgivet

    Extraction of Airways with Probabilistic State-Space Models and Bayesian Smoothing

    Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2017, Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics: First International Workshop, GRAIL 2017, 6th International Workshop, MFCA 2017, and Third International Workshop, MICGen 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. Cardoso, M. J., Arbel, T., Ferrante, E., Pennec, X., Dalca, A. V., Parisot, S., Joshi, S., Batmanghelich, N. K., Sotiras, A., Nielsen, M., Sabuncu, M. R., Fletcher, T., Shen, L., Durrleman, S. & Sommer, S. (red.). Springer, s. 53-63 (Lecture notes in computer science, Bind 10551).

    Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt

  15. Udgivet

    Extraction of airway trees using multiple hypothesis tracking and template matching

    Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2016, The Sixth International Workshop on Pulmonary Image Analysis: Athens, Greece - October 21, 2016. Beichel, R. R., Farahani, K., Jacobs, C., Kabus, S., Kiraly, A. P., Kuhnigk, J-M., McClelland, J. R., Mori, K., Petersen, J. & Rit, S. (red.). Create Space Independent Publishing Platform, s. 43-54 12 s.

    Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt

  16. Udgivet

    Extraction of Airways using Graph Neural Networks

    Selvan, Raghav, Kipf, T., Welling, M., Pedersen, J. J. H., Petersen, Jens & de Bruijne, Marleen, 2018. 3 s.

    Publikation: Konferencebidrag › Konferenceabstrakt til konference › Forskning › fagfællebedømt

  17. Udgivet

    Mean Field Network Based Graph Refinement with Application to Airway Tree Extraction

    Selvan, Raghav, Welling, M., Pedersen, J. J. H., Petersen, Jens & de Bruijne, Marleen, 2018, Medical Image Computingand Computer AssistedIntervention – MICCAI 2018: 21st International Conference, Granada, Spain, September 16–20, 2018, Proceedings, Part II. Frangi, A. F., Schnabel, J. A., Davatzikos, C., Alberola-López, C. & Fichtinger, G. (red.). Springer, s. 750-758 (Lecture notes in computer science, Bind 11071).

    Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt

  18. Udgivet

    Multiple hypothesis tracking based extraction of airway trees from CT data: using statistical ranking of template-matched hypotheses

    Selvan, Raghav, Petersen, Jens & de Bruijne, Marleen, 2016. 1 s.

    Publikation: Konferencebidrag › Poster › Forskning › fagfællebedømt

  19. Udgivet

    Explicit Temporal Embedding in Deep Generative Latent Models for Longitudinal Medical Image Synthesis

    Schön, Julian Elisha, Selvan, Raghav, Nygård, L., Vogelius, Ivan R. & Petersen, Jens, 13 jan. 2023, arxiv.org.

    Publikation: Working paper › Preprint › Forskning

  20. Udgivet

    Interpreting Latent Spaces of Generative Models for Medical Images using Unsupervised Methods

    Schön, Julian Elisha, Selvan, Raghav & Petersen, Jens, 2022, Deep Generative Models: Second MICCAI Workshop, DGM4MICCAI 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings. Springer, s. 24-33 (Lecture Notes in Computer Science, Bind 13609).

    Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt

  21. Udgivet

    Segmenting Two-Dimensional Structures with Strided Tensor Networks

    Selvan, Raghav, Dam, Erik Bjørnager & Petersen, Jens, 2021, Information Processing in Medical Imaging - 27th International Conference, IPMI 2021, Proceedings. Feragen, A., Sommer, S., Schnabel, J. & Nielsen, M. (red.). Springer, s. 401-414 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Bind 12729 LNCS).

    Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt

  22. Udgivet

    Patch-based Medical Image Segmentation using Matrix Product State Tensor Networks

    Selvan, Raghav, Dam, Erik Bjørnager, Flensborg, S. A. & Petersen, Jens, 2022, I: The Journal of Machine Learning for Biomedical Imaging. 2022, s. 1-24 005.

    Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

  23. Udgivet

    Graph Refinement based Airway Extraction using Mean-Field Networks and Graph Neural Networks

    Selvan, Raghav, Kipf, T., Welling, M., Juarez, A. G., Pedersen, J. H., Petersen, Jens & de Bruijne, Marleen, 2020, I: Medical Image Analysis. 64, 12 s., 101751.

    Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

  24. Udgivet

    Extracting tree structures in CT data by tracking multiple statistically ranked hypotheses

    Selvan, Raghav, Petersen, Jens, Pedersen, J. H. & de Bruijne, Marleen, 18 okt. 2019, I: Medical Physics. 46, 10, s. 4431-4440

    Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

  25. Udgivet

    Segmentation of roots in soil with U-Net

    Smith, Abraham George, Petersen, Jens, Selvan, Raghav & Rasmussen, Camilla Ruø, 2020, I: Plant Methods. 16, s. 1-15 13.

    Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

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