Extracting global structure from gene expression profiles
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Extracting global structure from gene expression profiles. / Fowlkes, C; Shan, Q; Belongie, S; Malik, J.
METHODS OF MICROARRAY DATA ANALYSIS II. ed. / SM Lin; KF Johnson. Kluwer Academic Publishers Group, 2002. p. 81-90.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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TY - GEN
T1 - Extracting global structure from gene expression profiles
AU - Fowlkes, C
AU - Shan, Q
AU - Belongie, S
AU - Malik, J
PY - 2002
Y1 - 2002
N2 - We have developed a program, GENECUT, for analyzing datasets from gene expression profiling. GENECUT is based on a pairwise clustering method known as Normalized Cul [Shi and Malik, 1997]. GENECUT extracts global structures by progressively partitioning datasets into well-balanced groups, performing an intuitive k-way partitioning at each stage in contrast to commonly used 2-way partitioning schemes. By making use of the Nystrom approximation, it is possible to perform clustering on very large genomic datasets.
AB - We have developed a program, GENECUT, for analyzing datasets from gene expression profiling. GENECUT is based on a pairwise clustering method known as Normalized Cul [Shi and Malik, 1997]. GENECUT extracts global structures by progressively partitioning datasets into well-balanced groups, performing an intuitive k-way partitioning at each stage in contrast to commonly used 2-way partitioning schemes. By making use of the Nystrom approximation, it is possible to perform clustering on very large genomic datasets.
KW - gene expression profiles
KW - clustering analysis
KW - spectral partitioning
KW - IMAGE SEGMENTATION
KW - NORMALIZED CUTS
KW - PATTERNS
U2 - 10.1007/0-306-47598-7_6
DO - 10.1007/0-306-47598-7_6
M3 - Article in proceedings
SN - 1-4020-7111-6
SP - 81
EP - 90
BT - METHODS OF MICROARRAY DATA ANALYSIS II
A2 - Lin, SM
A2 - Johnson, KF
PB - Kluwer Academic Publishers Group
T2 - 2nd Critical Assessment of Microarray Data Analysis (CAMDA 01)
Y2 - 15 October 2001 through 16 October 2001
ER -
ID: 302160853