JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.
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JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. / Bryne, Jan Christian; Valen, Eivind; Tang, Man-Hung Eric; Marstrand, Troels; Winther, Ole; da Piedade, Isabelle; Krogh, Anders; Lenhard, Boris; Sandelin, Albin.
I: Nucleic Acids Research, Bind 36, Nr. Database issue, 2008, s. D102-6.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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TY - JOUR
T1 - JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.
AU - Bryne, Jan Christian
AU - Valen, Eivind
AU - Tang, Man-Hung Eric
AU - Marstrand, Troels
AU - Winther, Ole
AU - da Piedade, Isabelle
AU - Krogh, Anders
AU - Lenhard, Boris
AU - Sandelin, Albin
N1 - Keywords: Access to Information; Animals; Binding Sites; Computational Biology; Data Interpretation, Statistical; Databases, Nucleic Acid; Humans; Internet; Models, Genetic; Promoter Regions (Genetics); RNA Splice Sites; Regulatory Elements, Transcriptional; Software; Transcription Factors; User-Computer Interface
PY - 2008
Y1 - 2008
N2 - JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR database-the JASPAR CORE sub-database-has increased by 12% in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.
AB - JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR database-the JASPAR CORE sub-database-has increased by 12% in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.
U2 - 10.1093/nar/gkm955
DO - 10.1093/nar/gkm955
M3 - Journal article
C2 - 18006571
VL - 36
SP - D102-6
JO - Nucleic Acids Research
JF - Nucleic Acids Research
SN - 0305-1048
IS - Database issue
ER -
ID: 6566380