Differentiable Boundary Point Extraction for Weakly Supervised Star-shaped Object Segmentation

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Although Deep Learning is the new gold standard in medical image segmentation, the annotation burden limits its expansion to clinical practice. We also observe a mismatch between annotations required by deep learning methods designed with pixel-wise optimization in mind and clinically relevant annotations designed for biomarkers extraction (diameters, counts, etc.). Our study proposes a first step toward bridging this gap, optimizing vessel segmentation based on its diameter annotations. To do so we propose to extract boundary points from a star-shaped segmentation in a differentiable manner. This differentiable extraction allows reducing annotation burden as instead of the pixel-wise segmentation only the two annotated points required for diameter measurement are used for training the model. Our experiments show that training based on diameter is efficient; produces state-of-the-art weakly supervised segmentation; and performs reasonably compared to full supervision.

OriginalsprogEngelsk
TidsskriftProceedings of Machine Learning Research
Vol/bind172
Sider (fra-til)188-198
ISSN2640-3498
StatusUdgivet - 2022
Begivenhed5th International Conference on Medical Imaging with Deep Learning, MIDL 2022 - Zurich, Schweiz
Varighed: 6 jul. 20228 jul. 2022

Konference

Konference5th International Conference on Medical Imaging with Deep Learning, MIDL 2022
LandSchweiz
ByZurich
Periode06/07/202208/07/2022

Bibliografisk note

Publisher Copyright:
© 2022 H. Kervadec, D. Bos & M. de Bruijne.

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