Marleen de Bruijne

Marleen de Bruijne

Professor


  1. Published

    Diagnosis of bronchiectasis and airway wall thickening in children with cystic fibrosis: objective airway-artery quantification

    Kuo, W., de Bruijne, Marleen, Petersen, Jens, Nasserinejad, K., Ozturk, H., Chen, Y., Perez-Rovira, A. & Tiddens, H. A. W. M., Nov 2017, In: European Radiology. 27, 11, p. 4680-4689 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    Diaphragmatic dysfunction in neuromuscular disease, an MRI study

    Harlaar, L., Ciet, P., van Tulder, G., Brusse, E., Timmermans, R. G. M., Janssen, W. G. M., de Bruijne, Marleen, van der Ploeg, A. T., Tiddens, H. A. W. M., van Doorn, P. A. & van der Beek, N. A. M. E., 2022, In: Neuromuscular Disorders. 32, 1, p. 15-24

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Differentiable Boundary Point Extraction for Weakly Supervised Star-shaped Object Segmentation

    Camarasa, R., Kervadec, H., Bos, D. & de Bruijne, Marleen, 2022, In: Proceedings of Machine Learning Research. 172, p. 188-198

    Research output: Contribution to journalConference articleResearchpeer-review

  4. Published

    Discriminative Shape Alignment

    Loog, M. & de Bruijne, Marleen, 2009, Information Processing in Medical Imaging. Springer, Vol. 5636/2009. p. 459-466 7 p. (Lecture notes in computer science, Vol. 5636).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  5. Published

    Dissimilarity Representations in Lung Parenchyma Classification

    Sørensen, L. E. B. L. & de Bruijne, Marleen, 2009, Medical Imaging 2009: Computer-Aided Diagnosis. Karssemeijer, N. & Giger, M. L. (eds.). SPIE - International Society for Optical Engineering, 12 p. (Proceedings of SPIE; No. 7260).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  6. Published

    Dissimilarity-based classification of anatomical tree structures

    Sørensen, L., Lo, P. C. P., Dirksen, A., Petersen, Jens & de Bruijne, Marleen, 2011, Information Processing in Medical Imaging: 22nd International Conference, IPMI 2011, Kloster Irsee, Germany, July 3-8, 2011. Proceedings. Székely, G. & Hahn, H. K. (eds.). Springer, p. 475-485 11 p. (Lecture notes in computer science, Vol. 6801).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  7. Published

    Dissimilarity-based multiple instance learning

    Sørensen, L., Loog, M., Tax, D. M. J., Lee, W., de Bruijne, Marleen & Duin, R. P. W., 2010, Structural, Syntactic, and Statistical Pattern Recognition: Joint IAPR International Workshop, SSPR&SPR 2010, Cesme, Izmir, Turkey, August 18-20, 2010. Proceedings. Hancock, E. R., Wilson, R. C., Windeatt, T., Ulusoy, I. & Escolano, F. (eds.). Springer, p. 129-138 10 p. (Lecture notes in computer science; No. 6218).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  8. Published

    Distribution, size, and shape of abdominal aortic calcified deposits and their relationship to mortality in postmenopausal women

    Nielsen, Mads, Ganz, Melanie, de Bruijne, Marleen, Dam , E., Karsdal , M. & Christiansen , C., 2011. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  9. Published

    Distribution, size, and shape of abdominal aortic calcified deposits and their relationship to mortality in postmenopausal women

    Ganz, Melanie, de Bruijne, Marleen, Dam, E. B., Pettersen, P., Karsdal, M. A., Christiansen, C. & Nielsen, Mads, 2012, In: International Journal of Biomedical Imaging. 2012, 8 p., 459286.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Distribution, size, shape, growth potential and extent of abdominal aortic calcified deposits predict mortality in postmenopausal women

    Nielsen, Mads, Ganz, Melanie, Lauze, Francois Bernard, Pettersen, P. C., de Bruijne, Marleen, Clarkson, T. B., Dam, E. B., Christiansen, C. & Karsdal, M. A., 2010, In: BMC Cardiovascular Disorders. 10, 10 p., 56.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Do you trust your multiple instance learning classifier?

    Cheplygina, V., Sørensen, L., Tax, D. M. J., de Bruijne, Marleen & Loog, M., 2017, Benelearn 2017: Proceedings of the Twenty-Sixth Benelux Conference on Machine Learning. Duivesteijn, W., Pechenizkiy, M., Fletcher, G., Menkovski, V., Postma, E., Vanschoren, J. & van der Putten, P. (eds.). p. 72-73 2 p.

    Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsResearch

  12. Published

    Early detection of emphysema progression

    Gorbunova, V., Jacobs, S. S. A. M., Lo, P. C. P., Dirksen, A., Nielsen, Mads, Bab-Hadiashar, A. & de Bruijne, Marleen, 2010, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010: 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part II. Jiang, T., Navab, N., Pluim, J. P. W. & Viergever, M. A. (eds.). Springer, Vol. Part II. p. 193-200 8 p. (Lecture notes in computer science; No. 6362).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  13. Published

    Early diagnosis of dementia based on intersubject whole-brain dissimilarities

    Klein, S., Loog, M., Lijn, F. V. D., Heijer, T. D., Hammers, A., de Bruijne, Marleen, Lugt, A. V. D., Duin, R. P. W., Breteler, M. M. B. & Niessen, W. J., 2010, 2010 IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE, p. 249-252 4 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  14. Published

    Early experiences with crowdsourcing airway annotations in chest CT

    Cheplygina, V., Perez-Rovira, A., Kuo, W., Tiddens, H. A. W. M. & de Bruijne, Marleen, 2016, Deep Learning and Data Labeling for Medical Applications: First International Workshop, LABELS 2016, and Second International Workshop, DLMIA 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 21, 2016, Proceedings. Carneiro, G., Mateus, D., Peter, L., Bradley, A., Tavares, J. M. R. S., Belagiannis, V., Papa, J. P., Nascimento, J. C., Loog, M., Lu, Z., Cardoso, J. S. & Cornebise, J. (eds.). Springer, p. 209-218 10 p. (Lecture notes in computer science, Vol. 10008).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  15. Published

    Editorial for the MEDIA MICCAI special issue 2021

    de Bruijne, Marleen, Cattin, P. C., Cotin, S., Padoy, N., Speidel, S., Zheng, Y. & Essert, C., Jan 2023, In: Medical Image Analysis. 83, 1 p., 102695.

    Research output: Contribution to journalEditorialResearch

  16. Published

    Effect of inspiration on airway dimensions measured in maximal inspiration CT images of subjects without airflow limitation

    Petersen, Jens, Wille, M. M. W., Raket, L. L., Feragen, A., Pedersen, J. H., Nielsen, Mads, Dirksen, A. & de Bruijne, Marleen, 2014, In: European Radiology. 24, 9, p. 2319-2325 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Efficient nonrigid registration using ranked order statistics

    Tennakoon, R. B., Bab-Hadiashar, A., de Bruijne, Marleen & Cao, Z., 2013, 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI). IEEE, p. 496-499 4 p. (International Symposium on Biomedical Imaging. Proceedings).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  18. Published

    Enlarged perivascular spaces in brain MRI: Automated quantification in four regions

    Dubost, F., Yilmaz, P., Adams, H., Bortsova, G., Ikram, M. A., Niessen, W., Vernooij, M. & de Bruijne, Marleen, 2019, In: NeuroImage. 185, p. 534-544

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Estimating risk of future fracture or deformity of vertebrae of spine, by comparing processed data representing appearance of vertebra of spine with statistical model and deriving similarity between vertebra of spine and model

    Ghosh, A., Nielsen, Mads, Karsdal, M. A., Christiansen, C., de Bruijne, Marleen & Petterson, P., 2011, IPC No. G06T-007/00, Patent No. WO2009124995-A1, 15 Oct 2009, Priority date 10 Apr 2008, Priority No. GB006509

    Research output: Patent

  20. Evaluating classifiers for atherosclerotic plaque component segmentation in MRI

    van Engelen, A., de Bruijne, Marleen, Schneider, T., van Dijk, A. C., Kooi, M. E., Hendrikse, J., Nederveen, A., Niessen, W. & Botnar, R. M., 2017, Medical Image Understanding and Analysis: 21st Annual Conference, MIUA 2017, Edinburgh, UK, July 11–13, 2017, Proceedings. Hernández, M. V. & González-Castro, V. (eds.). Springer, Vol. 723. p. 156-168 13 p. (Communications in Computer and Information Science, Vol. 723).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  21. Published

    Evaluation of automated statistical shape model based knee kinematics from biplane fluoroscopy

    Baka, N., Kaptein, B. L., Giphart, J. E., Staring, M., de Bruijne, Marleen, Lelieveldt, B. P. F. & Valstar, E., 2014, In: Journal of Biomechanics. 47, 1, p. 122-129 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge

    Murphy, K., van Ginneken, B., Reinhardt, J., Kabus, S., Ding, K., Deng, X., Cao, K., Du, K., Christensen, G., Garcia, V., Vercauteren, T., Ayache, N., Commowick, O., Malandain, G., Glocker, B., Paragios, N., Navab, N., Gorbunova, V., Sporring, J., de Bruijne, M. & 34 others, Han, X., Heinrich, M., Schnabel, J., Jenkinson, M., Lorenz, C., Modat, M., McClelland, J., Ourselin, S., Muenzing, S., Viergever, M., De Nigris, D., Collins, D., Arbel, T., Peroni, M., Li, R., Sharp, G., Schmidt-Richberg, A., Ehrhardt, J., Werner, R., Smeets, D., Loeckx, D., Song, G., Tustison, N., Avants, B., Gee, J., Staring, M., Klein, S., Stoel, B., Urschler, M., Werlberger, M., Vandemeulebroucke, J., Rit, S., Sarrut, D. & Pluim, J., 2011, In: IEEE Transactions on Medical Imaging. 30, 11, p. 1901-1920 20 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Event-Based Modeling with High-Dimensional Imaging Biomarkers for Estimating Spatial Progression of Dementia

    for the Alzheimer’s Disease Neuroimaging Initiative, F. A. D. N. I., 2019, Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Proceedings: 26th International Conference, IPMI 2019, Hong Kong, China, June 2–7, 2019,Proceedings. Bao, S., Chung, A. C. S., Gee, J. C. & Yushkevich, P. A. (eds.). Springer, p. 169-180 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11492 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  24. Published

    Expiratory computed tomography (CT) protocols made during voluntary breath hold may be sufficient for monitoring cystic fibrosis (CF) lung disease

    Loeve, M., Lequin, M., de Bruijne, Marleen, Hartmann, I. J., Hop, W. C. & Tiddens, H. A., 2008.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  25. Published

    Extracting tree structures in CT data by tracking multiple statistically ranked hypotheses

    Selvan, Raghav, Petersen, Jens, Pedersen, J. H. & de Bruijne, Marleen, 18 Oct 2019, In: Medical Physics. 46, 10, p. 4431-4440

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Extraction of Airways from CT (EXACT’09)

    Lo, P. C. P., van Ginneken, B., Reinhardt, J. M. & de Bruijne, Marleen, 2009, The Second International Workshop on Pulmonary Image Analysis. Brown, M., de Bruijne, M., van Ginneken, B., Kiraly, A., Kuhnigk, J-M., Lorenz, C., McClelland, J. R., Mori, K., Reeves, A. & Reinhardt, J. M. (eds.). CreateSpace, p. 175-189 15 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  27. Published

    Extraction of Airways using Graph Neural Networks

    Selvan, Raghav, Kipf, T., Welling, M., Pedersen, J. J. H., Petersen, Jens & de Bruijne, Marleen, 2018. 3 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  28. Published

    Extraction of Airways with Probabilistic State-Space Models and Bayesian Smoothing

    Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2017, Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics: First International Workshop, GRAIL 2017, 6th International Workshop, MFCA 2017, and Third International Workshop, MICGen 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. Cardoso, M. J., Arbel, T., Ferrante, E., Pennec, X., Dalca, A. V., Parisot, S., Joshi, S., Batmanghelich, N. K., Sotiras, A., Nielsen, M., Sabuncu, M. R., Fletcher, T., Shen, L., Durrleman, S. & Sommer, S. (eds.). Springer, p. 53-63 (Lecture notes in computer science, Vol. 10551).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  29. Published

    Extraction of airway trees using multiple hypothesis tracking and template matching

    Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2016, The Sixth International Workshop on Pulmonary Image Analysis: Athens, Greece - October 21, 2016. Beichel, R. R., Farahani, K., Jacobs, C., Kabus, S., Kiraly, A. P., Kuhnigk, J-M., McClelland, J. R., Mori, K., Petersen, J. & Rit, S. (eds.). Create Space Independent Publishing Platform, p. 43-54 12 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  30. Published

    Extraction of airways from CT (EXACT’09)

    Lo, P. C. P., Ginneken, B. V., Reinhardt, J. M., Yavarna, T., Jong, P. A. D., Irving, B., Fetita, C., Ortner, M., Pinho, R., Sijbers, J., Feuerstein, M., Fabijanska, A., Bauer, C., Beichel, R., Mendoza, C. S., Wiemker, R., Lee, J., Reeves, A. P., Born, S., Weinheimer, O. & 10 others, Rikxoort, E. M. V., Tschirren, J., Mori, K., Odry, B., Naidich, D. P., Hartmann, I., Hoffman, E. A., Prokop, M., Pedersen, J. H. & de Bruijne, Marleen, 2012, In: I E E E Transactions on Medical Imaging. 31, 11, p. 2093-2107 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Factors influencing the decline in lung density in a Danish lung cancer screening cohort

    Shaker, S. B., Dirksen, A., Lo, P. C. P., Skovgaard, Lene Theil, de Bruijne, Marleen & Pedersen, J. H., 2012, In: European Respiratory Journal. 40, 5, p. 1142-1148 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Feature Learning Based on Visual Similarity Triplets in Medical Image Analysis: A Case Study of Emphysema in Chest CT Scans

    Nyboe Ørting, S., Petersen, Jens, Cheplygina, V., Thomsen, L. H., Wille, M. M. W. & de Bruijne, Marleen, 2018, Intravascular Imaging and Computer Assisted Stenting and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 7th Joint International Workshop, CVII-STENT 2018 and Third International Workshop, LABELS 2018 Held in Conjunction with MICCAI 2018 Granada, Spain, September 16, 2018 Proceedings. Stoyanov, D., Taylor, Z., Balocco, S. & Sznitman, R. (eds.). Springer, p. 140-149 Chapter 16. (Lecture Notes in Computer Science, Vol. 11043).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  33. Published

    Feature-space transformation improves supervised segmentation across scanners

    van Opbroek, A., Achterberg, H. C. & de Bruijne, Marleen, 2015, Machine learning meets medical imaging: First International Workshop, MLMMI 2015, Held in Conjunction with ICML 2015, Lille, France, July 11, 2015, Revised Selected Papers. Springer, p. 85-93 9 p. (Lecture notes in computer science, Vol. 9487).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  34. Published

    First current density measurements with tangential Thomson scattering at RTP

    Karelse, F. A., Barth, C. J., Beurskens, M. N. A., de Bruijne, Marleen, Hogeweij, G. M. D., Cardozo, N. J. L., Meiden, H. J. V. D., Pijper, F. J. & RTP-team, T., 1 Sep 1997, Proceedings of the 8th International Symposium on Laser-aided Plasma Diagnostics. p. 253-258 6 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  35. Published

    Fluoroscopic assessment of femoral kinematics using a statistical shape model

    Baka, N., de Bruijne, Marleen, van Walsum, T., Kaptein, B., Giphart, E., Schaap, M., Niessen, W. & Lelieveldt, B., 2012, EORS 2012 Amsterdam: European Orthopaedic Research Society 20th annual meeting. EORS , p. 147148 2 p. 5B.2

    Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsResearchpeer-review

  36. Fully automated lung volume assessment from MRI in a population-based child cohort study

    Ivanovska, T., Ciet, P., Rerez-Rovira, A., Nguyen, A., Tiddens, H., Duijts, L., de Bruijne, Marleen & Wörgötter, F., 2017, Proceedings of the 12th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications. SCITEPRESS Digital Library, Vol. 6. p. 53-58 6 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  37. Published

    Fully automated measurement of radiological angles in hip dysplasia using CT images

    de Raedt, S., de Bruijne, Marleen, Mechlenburg, I., Stilling, M., Rømer, L. & Søballe, K., 2012. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  38. Published

    GP-Unet: Lesion detection from weak labels with a 3D regression network

    Dubost, F., Bortsova, G., Adams, H., Ikram, A., Niessen, W. J., Vernooij, M. & de Bruijne, Marleen, 2017, Medical Image Computing and Computer-Assisted Intervention − MICCAI 2017: 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part III. Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D. L. & Duschesne, S. (eds.). Springer, p. 214-221 8 p. (Lecture notes in computer science, Vol. 10435).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  39. Published

    Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations

    SpiroMeta Consortium, S. C., International COPD Genetics Consortium, I. C. G. C. & Understanding Society Scientific Group, U. S. S. G., 2019, In: Nature Genetics. 51, 3, p. 494-505

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Geodesic atlas-based labeling of anatomical trees: application and evaluation on airways extracted from CT

    Feragen, A., Petersen, Jens, Owen, M., Lo, P., Thomsen, L. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2015, In: IEEE Transactions on Medical Imaging. 34, 6, p. 1212-1226 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Geometric tree kernels: classification of COPD from airway tree geometry

    Feragen, A., Petersen, Jens, Grimm, D., Dirksen, A., Pedersen, J. J. H., Borgwardt, K. & de Bruijne, Marleen, 2013, Information Processing in Medical Imaging: 23rd International Conference, IPMI 2013, Asilomar, CA, USA, June 28–July 3, 2013. Proceedings. Gee, J. C., Joshi, S., Pohl, K. M., Wells, W. M. & Zöllei, L. (eds.). Springer, p. 171-183 13 p. (Lecture notes in computer science, Vol. 7917).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  42. Published

    Geometries on spaces of treelike shapes

    Feragen, A., Lauze, Francois Bernard, Lo, P. C. P., de Bruijne, Marleen & Nielsen, Mads, 2011, Computer Vision – ACCV 2010 : 10th Asian Conference on Computer Vision, Queenstown, New Zealand, November 8-12, 2010, Revised Selected Papers, Part II. Kimmel, R., Klette, R. & Sugimoto, A. (eds.). Springer, p. 160-173 14 p. (Lecture notes in computer science, Vol. 6493).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  43. Published

    Graph Refinement based Airway Extraction using Mean-Field Networks and Graph Neural Networks

    Selvan, Raghav, Kipf, T., Welling, M., Juarez, A. G., Pedersen, J. H., Petersen, Jens & de Bruijne, Marleen, 2020, In: Medical Image Analysis. 64, 12 p., 101751.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Graph cut-based segmentation

    Petersen, Jens, Oguz, I. & de Bruijne, Marleen, 2023, Medical Image Analysis. Academic Press, p. 247-273

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  45. Published

    Gray Matter Age Prediction as a Biomarker for Risk of Dementia

    Wang, J., Knol, M. J., Tiulpin, A., Dubost, F., de Bruijne, Marleen, Vernooij, M. W., Adams, H. H. H., Ikram, M. A., Niessen, W. J. & Roshchupkin, G. V., 15 Oct 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 42, p. 21213-21218

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Grey Matter Age Prediction as a Biomarker for Risk of Dementia: A Population-based Study

    Wang, J., Knol, M., Tiulpin, A., Dubost, F., de Bruijne, Marleen, Vernooij, M., Adams, H., Ikram, M. A., Niessen, W. & Roshchupkin, G., 2019, In: bioRxiv. 17 p., 518506.

    Research output: Contribution to journalJournal articleResearch

  47. Published

    Growth of the thoracic aorta in the smoking population: The Danish Lung Cancer Screening Trial

    Bons, L. R., Sedghi Gamechi, Z., Thijssen, C. G. E., Kofoed, Klaus Fuglsang, Pedersen, J. H., Saghir, Zaigham, Takkenberg, J. J. M., Kardys, I., Budde, R. P. J., de Bruijne, Marleen & Roos-Hesselink, J. W., 2020, In: International Journal of Cardiology. 299, p. 276-281

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    High shear stress relates to intraplaque haemorrhage in asymptomatic carotid plaques

    Tuenter, A., Selwaness, M., Arias Lorza, A., Schuurbiers, J. C. H., Speelman, L., Cibis, M., van der Lugt, A., de Bruijne, Marleen, van der Steen, A. F. W., Franco, O. H., Vernooij, M. W. & Wentzel, J. J., Aug 2016, In: Atherosclerosis. 251, p. 348–354 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Hippocampal shape is predictive for the development of dementia in a normal, elderly population

    Achterberg, H. C., van der Lijn, F., den Heijer, T., Vernooij, M. W., Ikram, M. A., Niessen, W. J. & de Bruijne, Marleen, 2014, In: Human Brain Mapping. 35, 5, p. 2359-2371 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Hippocampal shape predicts development of dementia in the general population

    Achterberg, H., de Bruijne, Marleen, Lijn, F. V. D., den Heijer , T., Vernooij , M., Ikram, M. A. & Niessen, W., 2011. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  51. Published

    Hydranet: Data augmentation for regression neural networks

    Dubost, F., Bortsova, G., Adams, H., Ikram, M. A., Niessen, W., Vernooij, M. & de Bruijne, Marleen, 1 Jan 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer VS, p. 438-446 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11767 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  52. Published

    Image dissimilarity-based quantification of lung disease from CT

    Sørensen, L., Loog, M., Lo, P. C. P., Ashraf, H., Dirksen, A., P. W. Duin, R. & de Bruijne, Marleen, 2010, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010: 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part I. Jiang, T., Navab, N., Pluim, J. P. W. & Viergever, M. A. (eds.). Springer, Vol. Part I. p. 37-44 8 p. (Lecture notes in computer science; No. 6361).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  53. Image segmentation by shape particle filtering

    de Bruijne, Marleen & Nielsen, M., 2004, Pattern Recognition, 2004. ICPR 2004. Proceedings of the 17th International Conference on. IEEE Signal Processing Society, Vol. 3. p. 722- 725

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  54. Published

    Imaging of respiratory muscles in neuromuscular disease: A review

    Harlaar, L., Ciet, P., van der Ploeg, A. T., Brusse, E., van der Beek, N. A. M. E., Wielopolski, P. A., de Bruijne, Marleen, Tiddens, H. A. W. M. & van Doorn, P. A., 1 Mar 2018, In: Neuromuscular Disorders. 28, 3, p. 246-256 11 p.

    Research output: Contribution to journalReviewResearchpeer-review

  55. Published

    Improved tissue segmentation by including an MR acquisition model

    Poot, D. H. J., de Bruijne, Marleen, Vernooij, M. W., Ikram, M. A. & Niessen, W. J., 2011, Multimodal Brain Image Analysis: First International Workshop, MBIA 2011, Held in Conjunction with MICCAI 2011, Toronto, Canada, September 18, 2011. Proceedings. Liu, T., Shen, D., Ibanez, L. & Tao, X. (eds.). Springer, p. 152-159 8 p. (Lecture notes in computer science, Vol. 7012).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  56. Published

    Increasing Accuracy of Optimal Surfaces Using Min-marginal Energies

    Petersen, Jens, Arias-Lorza, A. M., Selvan, Raghav, Bos, D., van der Lugt, A., Pedersen, J. H., Nielsen, Mads & de Bruijne, Marleen, 1 Jan 2019, In: IEEE Transactions on Medical Imaging. 38, 7, p. 1559-1568 8599009.

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. Published

    Integrating local voxel classification and global shape models for medical image segmentation

    van Rikxoort, E. M., de Bruijne, Marleen & van Ginneken, B., 2008, Medical Imaging 2008: Image Processing, Conference Proceedings. Reinhardt, J. M. & Pluim, J. P. W. (eds.). SPIE - International Society for Optical Engineering, p. Article 69144J 6 p. (Proceedings of SPIE; No. 6914).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  58. Interactive segmentation of abdominal aortic aneurysms in CTA images

    de Bruijne, Marleen, van Ginneken, B., Viergever, M. A. & Niessen, W. J., 2004, In: Medical Image Analysis. 8, 2, p. 127-138

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. Interactive shape models

    van Ginneken, B., de Bruijne, Marleen, Loog, M. & Viergever, M. A., 2003, Proceedings of SPIE. p. 1206-1216 (Medical Imaging 2003: Image Processing, Vol. 5032).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  60. Published

    Intracranial arteriosclerosis is related to cerebral small vessel disease: a prospective cohort study

    Vinke, E. J., Yilmaz, P., van der Toorn, J. E., Fakhry, R., Frenzen, K., Dubost, F., Licher, S., de Bruijne, Marleen, Kavousi, M., Ikram, M. A., Vernooij, M. W. & Bos, D., 2021, In: Neurobiology of Aging. 105, p. 16-24

    Research output: Contribution to journalJournal articleResearchpeer-review

  61. Published

    Iterated stacked classifiers for lung segmentation in computed tomography

    Ciompi, F., Gatta, C. & de Bruijne, Marleen, 2013, The Fifth International Workshop on Pulmonary Image Analysis: Nagoya, Japan - September 26, 2013. Beichel, R. R., de Bruijne, M., Kabus, S., Kiraly, A. P., Kitasaka, T., Kuhnigk, J-M., McClelland, J. R., van Rikxoort, E. & Rit, S. (eds.). CreateSpace Independent Publishing Platform , p. 63-74 12 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  62. Published

    LONGITUDINAL ASSESSMENT OF CT REGIONS OF LOW ATTENUATION REVERSIBILITY IN YOUNG CHILDREN WITH CYSTIC FIBROSIS

    Mok, L., Andrinopoulou, E., de Bruijne, Marleen, Tiddens, H., Stick, S. & Rosenow, T., 2018, In: Respirology. 23, Suppl. 1/SI, p. 57-57 TO 069.

    Research output: Contribution to journalMeeting AbstractResearch

  63. Published

    Label stability in multiple instance learning

    Cheplygina, V., Sørensen, L., Tax, D. M. J., de Bruijne, Marleen & Loog, M., 2015, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015: 18th international conference, Munich, Germany, October 5-9, 2015, Proceedings, Part I. Navab, N., Hornegger, J., Wells, W. M. & Frangi, A. F. (eds.). Springer, p. 539-546 8 p. (Lecture notes in computer science).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  64. Published

    Learning COPD Sensitive Filters in Pulmonary CT

    Sørensen, L. E. B. L., Lo, P. C. P., Ashraf, H., Sporring, Jon, Nielsen, Mads & de Bruijne, Marleen, 2009, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009. 7 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  65. Published

    Learning Cross-Modality Representations from Multi-Modal Images

    van Tulder, G. & de Bruijne, Marleen, 2019, In: IEEE Transactions on Medical Imaging. 38, 2, p. 638-648

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Published

    Learning features for tissue classification with the classification restricted Boltzmann machine

    van Tulder, G. & de Bruijne, Marleen, 2014, Medical Computer Vision: Algorithms for Big Data: International Workshop, MCV 2014, Held in Conjunction with MICCAI 2014, Cambridge, MA, USA, September 18, 2014, Revised Selected Papers. Menze, B., Langs, G., Montillo, A., Kelm, M., Müller, H., Zhang, S., Cai, W. T. & Metaxas, D. (eds.). Springer, p. 47-58 12 p. (Lecture notes in computer science).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  67. Published

    Learning from Imperfect Data: Weak Labels, Shifting Domains, and Small Datasets in Medical Imaging

    de Bruijne, Marleen, 2021, Bildverarbeitung für die Medizin 2021: Proceedings, German Workshop on Medical Image Computing, Regensburg, March 7-9, 2021. Springer, p. 1 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsResearch

  68. Published

    Learning to quantify emphysema extent: What labels do we need?

    Orting, S. N., Petersen, Jens, Thomsen, L. H., Winkler Wille, M. M. & de Bruijne, Marleen, 2020, In: IEEE Journal of Biomedical and Health Informatics. 24, 4, p. 1149 -1159

    Research output: Contribution to journalJournal articleResearchpeer-review

  69. Published
  70. Published

    Leveraging Ellipsoid Bounding Shapes and Fast R-CNN for Enlarged Perivascular Spaces Detection and Segmentation

    Zabihi, M., Tangwiriyasakul, C., Ingala, S., Lorenzini, L., Camarasa, R., Barkhof, F., de Bruijne, Marleen, Cardoso, M. J. & Sudre, C. H., 2024, Machine Learning in Medical Imaging - 14th International Workshop, MLMI 2023, Held in Conjunction with MICCAI 2023, Proceedings. Cao, X., Ouyang, X., Xu, X., Rekik, I. & Cui, Z. (eds.). Springer, p. 325-334 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 14349 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  71. Published

    Local appearance features for robust MRI brain structure segmentation across scanning protocols

    Achterberg, H. C., Poot, D. H. J., van der Lijn, F., Vernooij, M. W., Ikram, M. A., Niessen, W. J. & de Bruijne, Marleen, 2013, Medical Imaging 2013: image processing . Ourselin, S. & Haynor, D. R. (eds.). SPIE - International Society for Optical Engineering, 7 p. 866905. (Progress in Biomedical Optics and Imaging; No. 36, Vol. 14).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  72. Localization and segmentation of aortic endografts using marker detection

    de Bruijne, Marleen, Niessen, W. J., Maintz, J. B. A. & Viergever, M. A., 2003, In: IEEE Transactions on Medical Imaging. 22, 4, p. 473- 482

    Research output: Contribution to journalJournal articleResearchpeer-review

  73. Published

    Longitudinal analysis of airways using registration

    Petersen, Jens, Gorbunova, V., Nielsen, Mads, Dirksen, A., Lo, P. C. P. & de Bruijne, Marleen, 2011, The Fourth International Workshop on Pulmonary Image Analysis. Beichel, R., de Bruijne, M., van Ginneken, B., Kabus, S., Kiraly, A., Kuhnigk, J-M., McClelland, J., Mori, K., van Rikxoort, E. & Rit, S. (eds.). CreateSpace Independent Publishing Platform , p. 11-22 12 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  74. Published

    Longitudinal assessment of carotid plaque texture in three-dimensional ultrasound images based on semi-supervised graph-based dimensionality reduction and feature selection

    Lin, M., Cui, H., Chen, W., van Engelen, A., de Bruijne, Marleen, Azarpazhooh, M. R., Sohrevardi, S. M., Spence, J. D. & Chiu, B., Jan 2020, In: Computers in Biology and Medicine. 116, 11 p., 103586.

    Research output: Contribution to journalJournal articleResearchpeer-review

  75. Published

    Lung CT registration combining intensity, curves and surfaces

    Gorbunova, V., Durrieman, S., Lo, P. C. P., Pennec, X. & de Bruijne, Marleen, 2010, Proceedings - 2010 7th IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE, p. 340-343 4 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  76. Published

    Lung MRI and impairment of diaphragmatic function in Pompe disease

    Wens, S. C. A., Ciet, P., Perez-Rovira, A., Logie, K., Salamon, E., Wielopolski, P., de Bruijne, Marleen, Kruijshaar, M. E., Tiddens, H. A. W. M., van Doorn, P. A. & van der Ploeg, A. T., 2015, In: BMC Pulmonary Medicine. 15, 54.

    Research output: Contribution to journalJournal articleResearchpeer-review

  77. Published

    Lung tissue classification in severe advanced cystic fibrosis from CT scans

    Ciompi, F., Palaioroutas, A., Loeve, M., Pujol, O., Radeva, P., Tiddens, H. & de Bruijne, Marleen, 2011, The Fourth International Workshop on Pulmonary Image Analysis. Beichel, R., de Bruine, M., van Ginneken, B., Kabus, S., Kiraly, A., Kuhnigk, J-M., McClelland, J., Mori, K., van Rikxoort, E. & Rit, S. (eds.). CreateSpace Independent Publishing Platform , p. 57-68 12 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  78. Published

    MACD - an imaging marker for cardiovascular disease

    Ganz, Melanie, de Bruijne, Marleen & Nielsen, Mads, 2010, Medical Imaging 2010: computer-aided diagnosis. Karssemeijer, N. & Summers, R. M. (eds.). SPIE - International Society for Optical Engineering, 9 p. 76240

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  79. Published

    MRBrainS challenge: online evaluation framework for brain image segmentation in 3T MRI scans

    Mendrik, A. M., Vincken, K. L., Kuijf, H. J., Breeuwer, M., Bouvy, W., de Bresser, J., Alansary, A., de Bruijne, M., Carass, A., El-Baz, A., Jog, A., Katyal, R., Khan, A. R., van der Lijn, F., Mahmood, Q., Mukherjee, R., van Opbroek, A., Paneri, S., Pereira, S., Persson, M. & 9 others, Sarikaya, M. R. A. D., Smedby, Ö., Silva, C. A., Vrooman, H. A., Vyas, S., Wang, C., Zhao, L., Biessels, G. J. & Viergever, M. A., 2015, In: Computational Intelligence and Neuroscience. 2015, 16 p., 813696.

    Research output: Contribution to journalJournal articleResearchpeer-review

  80. Published

    MRI changes in diaphragmatic motion and curvature in Pompe disease over time

    Harlaar, L., Ciet, P., van Tulder, G., van Kooten, H. A., van der Beek, N. A. M. E., Brusse, E., de Bruijne, Marleen, Tiddens, H. A. W. M., van der Ploeg, A. T. & van Doorn, P. A., 2022, In: European Radiology. 32, p. 8681–8691

    Research output: Contribution to journalJournal articleResearchpeer-review

  81. Published

    MRI tracheomalacia (TM) assessment in pediatric patients: feasibility study

    Ciet, P., Wielopolski, P., Lever, S., Manniesing, R., de Bruijne, Marleen, Lequin, M. H. & Tiddens, H. A. W. M., 2011.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  82. Published

    Machine learning approaches in medical image analysis: from detection to diagnosis

    de Bruijne, Marleen, 2016, In: Medical Image Analysis. 33, p. 94-97 4 p.

    Research output: Contribution to journalEditorialResearchpeer-review

  83. Published

    Manual airway labeling has limited reproducibility

    Petersen, Jens, Feragen, A., Thomsen, L. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2013. 10 p.

    Research output: Contribution to conferencePosterResearchpeer-review

  84. Published

    Mass Preserving Registration for lung CT

    Gorbunova, V., Lo, P. C. P., Loeve, M., Tiddens, H., Sporring, Jon, Nielsen, Mads & de Bruijne, Marleen, 2009, Proceedings of the SPIE: Medical Imaging 2009: Image Processing. Vol. 7259. 10 p. (Proceedings of the SPIE, Vol. 7259).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  85. Published

    Mass preserving image registration: results of Evaluation of Methods for Pulmonary Image Registration 2010 Challenge

    Gorbunova, V., Sporring, Jon, Lo, P. C. P., Dirksen, A. & de Bruijne, Marleen, 2010, Medical image analysis for the clinic: a grand challenge: workshop proceedings from the 13th International Conference on Medical Image Computing And Computer Assisted Intervention. van Ginneken, B., Murphy, K., Heimann, T., Pekar, V. & Deng, X. (eds.). CreateSpace Independent Publishing Platform , p. 155-164 10 p.

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  86. Published

    Mass preserving image registration for lung CT

    Gorbunova, V., Sporring, Jon, Lo, P. C. P., Loeve, M., Tiddens, H. A., Nielsen, Mads, Dirksen, A. & de Bruijne, Marleen, 2012, In: Medical Image Analysis. 16, 4, p. 786-795 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  87. Published

    Maximization of regional probabilities using Optimal Surface Graphs: application to carotid artery segmentation in MRI

    Arias Lorza, A. M., Van Engelen, A., Petersen, Jens, Van Der Lugt, A. & de Bruijne, Marleen, 1 Mar 2018, In: Medical Physics. 45, 3, p. 1159-1169

    Research output: Contribution to journalJournal articleResearchpeer-review

  88. Published

    Maximum a posteriori estimation of linear shape variation with application to vertebra and cartilage modeling

    Crimi, A., Lillholm, Martin, Nielsen, Mads, Ghosh, A., de Bruijne, Marleen, Dam, E. B. & Sporring, Jon, 2011, In: IEEE Transactions on Medical Imaging. 30, 8, p. 1514-1526 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  89. Published

    Mean Field Network Based Graph Refinement with Application to Airway Tree Extraction

    Selvan, Raghav, Welling, M., Pedersen, J. J. H., Petersen, Jens & de Bruijne, Marleen, 2018, Medical Image Computingand Computer AssistedIntervention – MICCAI 2018: 21st International Conference, Granada, Spain, September 16–20, 2018, Proceedings, Part II. Frangi, A. F., Schnabel, J. A., Davatzikos, C., Alberola-López, C. & Fichtinger, G. (eds.). Springer, p. 750-758 (Lecture notes in computer science, Vol. 11071).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  90. Published

    Measurements of the current density profile with tangential Thomson scattering in RTP

    Karelse, F., de Bruijne, Marleen, Barth, C., Beurskens, M., Hogeweij, G. & Cardozo, N., Apr 2001, In: Plasma Physics and Controlled Fusion. 43, 4, p. 443-468

    Research output: Contribution to journalJournal articleResearchpeer-review

  91. Published

    Measuring trapped air by computed tomography (CT) in CF: In search of the optimal protocol

    Loeve, M., Lequin, M., de Bruijne, Marleen, Hartmann, I., Hop, W. & Tiddens, H., 2008. 1 p.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  92. Published
  93. Published

    Method of analyzing image for assessing condition of organ e.g. lung of patient represented in image, involves providing quantitative measure of extent of condition in image based on number of identified inspection regions

    Stick, S. M., Rosenow, T., Tiddens, H. A. W. M. & de Bruijne, Marleen, 2016, IPC No. G06T-007/00, Patent No. WO2016183609-A1, 24 Nov 2016, Priority date 20 May 2015, Priority No. AU901841

    Research output: Patent

  94. Published
  95. Model-based segmentation of abdominal aortic aneurysms in CTA images

    de Bruijne, Marleen, van Ginneken, B., Niessen, W. J., Loog, M. & Viergever, M. A., 2003, Proceedings of SPIE. p. 1560-1571 (Medical Imaging 2003: Image Processing, Vol. 5032).

    Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

  96. Model-based segmentation of vascular images

    de Bruijne, Marleen, 2003, Utrecht University, The Netherlands.

    Research output: Book/ReportPh.D. thesisResearch

  97. Published

    Monitoring of air trapping in a cohort of CF patients measured by computed tomography (CT) and pulmonary function tests

    Loeve, M., Lequin, M. H., de Bruijne, Marleen, Hartmann, I. J., Hop, W. C. & Tiddens, H. A., 2008.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  98. E-pub ahead of print

    Morphology of the dysplastic hip and the relationship with sex and acetabular version

    Mechlenburg, I., De Raedt, S., Achterberg, H. C., Stilling, M., Rømer, L., Søballe, K. & de Bruijne, Marleen, 2024, (E-pub ahead of print) In: Clinical Anatomy.

    Research output: Contribution to journalJournal articleResearchpeer-review

  99. Published

    Multi-atlas image registration of clinical data with automated quality assessment using ventricle segmentation

    Dubost, F., de Bruijne, Marleen, Nardin, M., Dalca, A. V., Donahue, K. L., Giese, A., Etherton, M. R., Wu, O., Groot, M. D., Niessen, W., Vernooij, M., Rost, N. S. & Schirmer, M. D., 2020, In: Medical Image Analysis. 63, 14 p., 101698.

    Research output: Contribution to journalJournal articleResearchpeer-review

  100. Published

    Multi-center MRI carotid plaque component segmentation using feature normalization and transfer learning

    van Engelen, A., van Dijk, A. C., Truijman, M. T. B., van't Klooster, R., van Opbroek, A., van der Lugt, A., Niessen, W. J., Kooi, M. E. & de Bruijne, Marleen, 2015, In: IEEE Transactions on Medical Imaging. 34, 6, p. 1294-1305 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

ID: 545222