Jens Petersen

Jens Petersen

Associate Professor

ORCID: 0000-0003-0138-0693

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  1. Published

    Quantification and visualization of variation in anatomical trees

    Amenta, N., Datar, M., Dirksen, A., de Bruijne, Marleen, Feragen, A., Ge, X., Pedersen, J., Howard, M., Owen, M., Petersen, Jens, Shi, J. & Xu, Q., 2015, Research in shape modeling. Leonard, K. & Tari, S. (eds.). Springer, p. 57-79 23 p. (Association for Women in Mathematics Series, Vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  2. Published

    Carotid artery wall segmentation by coupled surface graph cuts

    Arias, A., Petersen, Jens, van Engelen, A., Tang, H., Selwaness, M., Witteman, J. C. M., van der Lugt, A., Niessen, W. & de Bruijne, Marleen, 2013, Medical Computer Vision. Recognition techniques and applications in medical imaging: Second International MICCAI Workshop, MCV 2012, Nice, France, Revised Selected Papers. Menze, B. H., Langs, G., Lu, L., Montillo, A., Tu, Z. & Criminisi, A. (eds.). Springer, p. 38-47 10 p. (Lecture notes in computer science, Vol. 7766).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  3. Published

    Maximization of regional probabilities using Optimal Surface Graphs: application to carotid artery segmentation in MRI

    Arias Lorza, A. M., Van Engelen, A., Petersen, Jens, Van Der Lugt, A. & de Bruijne, Marleen, 1 Mar 2018, In: Medical Physics. 45, 3, p. 1159-1169

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Carotid artery wall segmentation in multispectral MRI by coupled optimal surface graph cuts

    Arias-Lorza, A. M., Petersen, Jens, van Engelen, A., Selwaness, M., van der Lugt, A., J. Niessen, W. & de Bruijne, Marleen, 2016, In: IEEE Transactions on Medical Imaging. 35, 3, p. 901-911 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Reproducibility of a combined artificial intelligence and optimal-surface graph-cut method to automate bronchial parameter extraction

    Dudurych, I., Garcia-Uceda, A., Petersen, Jens, Du, Y., Vliegenthart, R. & de Bruijne, Marleen, 2023, In: European Radiology. 33, p. 6718–6725

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Semi-automated detection of pulmonary congestion in patients with non-ST acute coronary syndrome by using of quantitative chest cardiac-CT analysis: Analysis of methodological aspects

    Fabricius-Bjerre, A. A., Petersen, Jens, Heitmann, Merete, Elming, H., Ashraf, H., Kofoed, Klaus Fuglsang, Kuhl, J. T., Køber, Lars Valeur & Nielsen, Olav Wendelboe, 2018, In: European Journal of Heart Failure. 20, S1, p. 475-476 P1854.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  7. Published

    A hierarchical scheme for geodesic anatomical labeling of airway trees

    Feragen, A., Petersen, Jens, Owen, M., Lo, P. C. P., Thomsen, L., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2012, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2012: 15th International Conference, Nice, France, October 1-5, 2012, Proceedings, Part III. Ayache, N., Delingette, H., Golland, P. & Mori, K. (eds.). Springer, p. 147-155 9 p. (Lecture notes in computer science, Vol. 7512).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  8. Published

    Geodesic atlas-based labeling of anatomical trees: application and evaluation on airways extracted from CT

    Feragen, A., Petersen, Jens, Owen, M., Lo, P., Thomsen, L. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2015, In: IEEE Transactions on Medical Imaging. 34, 6, p. 1212-1226 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Tree-space statistics and approximations for large-scale analysis of anatomical trees

    Feragen, A., Owen, M., Petersen, Jens, Wille, M. M. W., Thomsen, L. H., Dirksen, A. & de Bruijne, Marleen, 2013, Information Processing in Medical Imaging: 23rd International Conference, IPMI 2013, Asilomar, CA, USA, June 28–July 3, 2013. Proceedings. Gee, J. C., Joshi, S., Pohl, K. M., Wells, W. M. & Zöllei, L. (eds.). Springer, p. 74-85 12 p. (Lecture notes in computer science, Vol. 7917).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  10. Published

    Scalable kernels for graphs with continuous attributes

    Feragen, A., Kasenburg, N., Petersen, Jens, de Bruijne, Marleen & Borgwardt, K., 2013, 27th Annual Conference on Neural Information Processing Systems 2013: NIPS 2013. Burges, C. J. C., Bottou, L., Welling, M., Ghahramani, Z. & Weinberger, K. Q. (eds.). Curran Associates, Inc., p. 216-224 9 p. (Advances in Neural Information Processing Systems, Vol. 26).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  11. Published

    Geometric tree kernels: classification of COPD from airway tree geometry

    Feragen, A., Petersen, Jens, Grimm, D., Dirksen, A., Pedersen, J. J. H., Borgwardt, K. & de Bruijne, Marleen, 2013, Information Processing in Medical Imaging: 23rd International Conference, IPMI 2013, Asilomar, CA, USA, June 28–July 3, 2013. Proceedings. Gee, J. C., Joshi, S., Pohl, K. M., Wells, W. M. & Zöllei, L. (eds.). Springer, p. 171-183 13 p. (Lecture notes in computer science, Vol. 7917).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  12. Published

    Multisystem inflammatory syndrome in children occurred in one of four thousand children with severe acute respiratory syndrome coronavirus 2

    Holm, M., Hartling, U. B., Schmidt, Lisbeth Samsø, Glenthøj, J. P., Kruse, A., Rytter, Maren Johanne Heilskov, Lindhard, M. S., Lawaetz, M. C., Zaharov, T., Petersen, Jens, Andersen, R. M., Lemvik, G., Marcinski, P., Thaarup, J., Jensen, Lise Heilmann, Borch, L., Nielsen, A. B., Vissing, N. H., Schmiegelow, Kjeld & Nygaard, Ulrikka, Sep 2021, In: Acta Paediatrica, International Journal of Paediatrics. 110, 9, p. 2581-2583 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Structural characterisation of multilayer lipid bilayer by small-angel neutron and X-ray scattering

    Ishoy, T., Lemmich, J., Ipsen, J., Honger, T., Petersen, Jens, Kharkar, J., Nylander, T., Mortensen, Kell, Bauer, R. & Mouritsen, Ole G., 1 Jan 2001, In: Biophysical Society. Annual Meeting. Abstracts. 80, 1, p. 522A-522A

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Developing and validating COVID-19 adverse outcome risk prediction models from a bi-national European cohort of 5594 patients

    Jimenez-Solem, E., Petersen, T. S., Hansen, C., Hansen, C., Lioma, C., Igel, C., Boomsma, W., Krause, O., Lorenzen, S., Selvan, R., Petersen, J., Nyeland, M. E., Ankarfeldt, M. Z., Virenfeldt, G. M., Winther-Jensen, M., Linneberg, A., Ghazi, M. M., Detlefsen, N., Lauritzen, A. D., Smith, A. G. & 15 others, de Bruijne, Marleen, Ibragimov, Bulat, Petersen, Jens, Lillholm, Martin, Middleton, Jon Anthony, Mogensen, S. H., Thorsen-Meyer, H., Perner, Anders, Helleberg, M., Kaas-Hansen, Benjamin Skov, Bonde, M., Bonde, A., Pai, A., Nielsen, Mads & Sillesen, Martin Hylleholt, 2021, In: Scientific Reports. 11, 1, 12 p., 3246.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    A Cross-Center Smoothness Prior for Variational Bayesian Brain Tissue Segmentation

    Kouw, W. M., Ørting, S. N., Petersen, Jens, Steenstrup Pedersen, Kim & de Bruijne, Marleen, 1 Jan 2019, Information Processing in Medical Imaging : 26th International Conference, IPMI 2019, Proceedings. Bao, S., Chung, A. C. S., Gee, J. C. & Yushkevich, P. A. (eds.). Springer, p. 360-371 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11492 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  16. Published

    Diagnosis of bronchiectasis and airway wall thickening in children with cystic fibrosis: objective airway-artery quantification

    Kuo, W., de Bruijne, Marleen, Petersen, Jens, Nasserinejad, K., Ozturk, H., Chen, Y., Perez-Rovira, A. & Tiddens, H. A. W. M., Nov 2017, In: European Radiology. 27, 11, p. 4680-4689 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Carotid artery lumen segmentation in 3D free-hand ultrasound images using surface graph cuts

    Lorza, A. M. A., Carvalho, D. D. B., Petersen, Jens, Dijk, A. C. V., Lugt, A. V. D., Niessen, W. J., Klein, S. & de Bruijne, Marleen, 2013, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013: 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part II. Mori, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (eds.). Springer, p. 542-549 8 p. (Lecture notes in computer science, Vol. 8150).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  18. Published

    Airway distensibility in chronic obstructive pulmonary disease – evaluation by CT airway segmentation and lung density measurement based on the Danish lung cancer screening trial

    M. W. Wille, M., Petersen, Jens, Dirksen, A., Pedersen, J. J. H. & de Bruijne, Marleen, 2013, In: American Journal of Respiratory and Critical Care Medicine. 187, p. A2871 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  19. Published

    Feature Learning Based on Visual Similarity Triplets in Medical Image Analysis: A Case Study of Emphysema in Chest CT Scans

    Nyboe Ørting, S., Petersen, Jens, Cheplygina, V., Thomsen, L. H., Wille, M. M. W. & de Bruijne, Marleen, 2018, Intravascular Imaging and Computer Assisted Stenting and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 7th Joint International Workshop, CVII-STENT 2018 and Third International Workshop, LABELS 2018 Held in Conjunction with MICCAI 2018 Granada, Spain, September 16, 2018 Proceedings. Stoyanov, D., Taylor, Z., Balocco, S. & Sznitman, R. (eds.). Springer, p. 140-149 Chapter 16. (Lecture Notes in Computer Science, Vol. 11043).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  20. Published

    Population-based Incidence of Myopericarditis After COVID-19 Vaccination in Danish Adolescents

    Nygaard, Ulrikka, Holm, M., Bohnstedt, Cathrine, Chai, Q., Schmidt, Lisbeth Samsø, Hartling, U. B., Petersen, Jens, Thaarup, J., Bjerre, J., Vejlstrup, N. G., Juul, K. & Stensballe, Lone Graff, Jan 2022, In: Pediatric Infectious Disease Journal. 41, 1, p. E25-E28 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  21. Published

    Learning to quantify emphysema extent: What labels do we need?

    Orting, S. N., Petersen, Jens, Thomsen, L. H., Winkler Wille, M. M. & de Bruijne, Marleen, 2020, In: IEEE Journal of Biomedical and Health Informatics. 24, 4, p. 1149 -1159

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Detecting emphysema with multiple instance learning

    Orting, S. N., Petersen, Jens, Thomsen, L. H., Wille, M. M. W. & de Bruijne, Marleen, 23 May 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE, p. 510-513

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  23. Published

    Automatic airway-artery analysis on lung CT to quantify airway wall thickening and bronchiectasis

    Perez-Rovira, A., Kuo, W., Petersen, Jens, Tiddens, H. A. W. M. & de Bruijne, Marleen, 2016, In: Medical Physics. 43, 10, p. 5736-5744 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Automated quantification of bronchiectasis, airway wall thickening and lumen tapering in chest CT

    Perez-Rovira, A., Kuo, W., Petersen, Jens, A.W.M. Tiddens, H. & de Bruijne, Marleen, 2015. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  25. Published

    Manual airway labeling has limited reproducibility

    Petersen, Jens, Feragen, A., Thomsen, L. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2013. 10 p.

    Research output: Contribution to conference › Poster › Research › peer-review

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