Jon Sporring
Professor
Image Analysis, Computational Modelling and Geometry
Universitetsparken 1
2100 København Ø
- 2024
- E-pub ahead of print
Young glial progenitor cells competitively replace aged and diseased human glia in the adult chimeric mouse brain
Vieira, R., Mariani, J. N., Huynh, N. P. T., Stephensen, Hans Jacob Teglbjærg, Solly, R., Tate, A., Schanz, S., Cotrupi, N., Mousaei, M., Sporring, Jon, Benraiss, A. & Goldman, Steven Alan, 2024, (E-pub ahead of print) In: Nature Biotechnology.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A semi-automatic method for extracting mitochondrial cristae characteristics from 3D focused ion beam scanning electron microscopy data
Wang, C., Østergaard, L., Hasselholt, S. & Sporring, Jon, 2024, In: Communications Biology . 7, 1, 377.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
A Practical Approach to Estimating the Effect of Synchrotron Radiation on Sperm Motility and Viability
Lindhøj, M. B., Bonnin, A., Almstrup, K., Dyrby, T., Mokso, R. & Sporring, Jon, 2023, bioRxiv, 18 p.Research output: Working paper › Preprint › Research
- Published
Multi-scale and Multi-resolution
Sporring, Jon, 2023, Medical Image Analysis. Frangi, A., Prince, J. & Sonka, M. (eds.). Elsevier, 33 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Multiscale and multiresolution analysis
Sporring, Jon, 2023, Medical Image Analysis. Academic Press, p. 177-197Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Astrocytic engagement of the corticostriatal synaptic cleft is disrupted in a mouse model of Huntington’s disease
Villanueva, C. B., Stephensen, Hans Jacob Teglbjærg, Mokso, R., Benraiss, A., Sporring, Jon & Goldman, Steven Alan, 2023, In: Proceedings of the National Academy of Sciences USA (PNAS). 120, 24, 11 p., e2210719120.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Parametric Volumetric Registration
Yushkevich, P. A., Zhang, M. & Sporring, Jon, 29 Sep 2023, Medical Image Analysis. Frangi, A., Prince, J. & Sonka, M. (eds.). Academic Press, p. 331-354 24 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Morphology on Categorical Distributions
Ørting, S. N., Stephensen, Hans Jacob Teglbjærg & Sporring, Jon, 2023, In: Journal of Mathematical Imaging and Vision. 65, p. 861–873Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
Layer III pyramidal cells in the prefrontal cortex reveal morphological changes in subjects with depression, schizophrenia, and suicide
Larsen, N. Y., Vihrs, N., Møller, J., Sporring, Jon, Tan, X., Li, X., Ji, G., Rajkowska, G., Sun, F. & Nyengaard, J. R., 2022, In: Translational Psychiatry. 12, 1, p. 363 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An algebra for local histograms
Sporring, Jon & Darkner, Sune, 2022, In: Frontiers in Computer Science. 4, p. 1-9 939563.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reconstructing Binary Signals from Local Histograms
Sporring, Jon & Darkner, Sune, 21 Mar 2022, In: Entropy. 24, 3, p. 1-11 433.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extracting Mitochondrial Cristae Characteristics from 3D Focused Ion Beam Scanning Electron Microscopy Data
Wang, C., Østergård, L., Hasselholt, S. & Sporring, Jon, 9 Nov 2022, bioRxiv. 20 p.Research output: Book/Report › Report › Research
- 2021
- Published
Currents and K-functions for Fiber Point Processes
Hansen, P. E. H., Waagepetersen, R. P., Svane, A. M., Sporring, Jon, Stephensen, Hans Jacob Teglbjærg, Hasselholt, S. & Sommer, Stefan Horst, 2021, Geometric Science of Information: 5th International Conference, GSI 2021, Paris, France, July 21–23, 2021, Proceedings. Nielsen, F. & Barbaresco, F. (eds.). Springer, p. 127-134 (Lecture Notes in Computer Science, Vol. 12829).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Currents and K-functions for Fiber Point Processes
Hansen, P. E. H., Waagepetersen, R. P., Svane, A. M., Sporring, Jon, Stephensen, Hans Jacob Teglbjærg, Hasselholt, S. & Sommer, Stefan Horst, 2021, arXiv preprint. 12 p.Research output: Book/Report › Report › Research
- Published
How Few Annotations are Needed for Segmentation Using a Multi-planar U-Net?
Laprade, W. M., Perslev, Mathias & Sporring, Jon, 2021, Deep Generative Models, and Data Augmentation, Labelling, and Imperfections - First Workshop, DGM4MICCAI 2021, and First Workshop, DALI 2021, Held in Conjunction with MICCAI 2021, Proceedings. Engelhardt, S., Oksuz, I., Zhu, D., Yuan, Y., Mukhopadhyay, A., Heller, N., Huang, S. X., Nguyen, H., Sznitman, R. & Xue, Y. (eds.). Springer, p. 209-216 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 13003 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Cellular 3D-reconstruction and analysis in the human cerebral cortex using automatic serial sections
Larsen, N. Y., Li, X., Tan, X., Ji, G., Lin, J., Rajkowska, G., Møller, J., Vihrs, N., Sporring, Jon, Sun, F. & Nyengaard, J. R., Dec 2021, In: Communications Biology . 4, 1, 15 p., 1030.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Measuring Shape Relations Using r-Parallel Sets
Stephensen, Hans Jacob Teglbjærg, Svane, A. M., Villanueva, C. B., Goldman, Steven Alan & Sporring, Jon, 2021, In: Journal of Mathematical Imaging and Vision. 63, p. 1069–1083 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Comparison of manual and machine learning image processing approaches to determine fungiform papillae on the tongue
Cattaneo, C., Liu, J., Wang, C., Pagliarini, E., Sporring, Jon & Bredie, Wender, 2020, bioRxiv, 18 p.Research output: Working paper › Preprint › Research
- Published
Comparison of manual and machine learning image processing approaches to determine fungiform papillae on the tongue
Cattaneo, C., Liu, J., Wang, C., Pagliarini, E., Sporring, Jon & Bredie, Wender, 2020, In: Scientific Reports. 10, 15 p., 18694.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Restoring drifted electron microscope volumes using synaptic vesicles at sub-pixel accuracy
Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 2020, In: Communications Biology. 3, 1, 7 p., ´81.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Novel Approach to Tongue Standardization and Feature Extraction
Wang, C., Cattaneo, C., Liu, J., Bredie, Wender, Pagliarini, E. & Sporring, Jon, 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020: 23rd International Conference, Proceedings. Martel, A. L., Abolmaesumi, P., Stoyanov, D., Mateus, D., Zuluaga, M. A., Zhou, S. K., Racoceanu, D. & Joskowicz, L. (eds.). Springer, p. 36-45 (Lecture Notes in Computer Science, Vol. 12265 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Morphology on categorical distributions
Ørting, S. N., Stephensen, Hans Jacob Teglbjærg & Sporring, Jon, 14 Dec 2020, arXiv.org.Research output: Book/Report › Report › Research
- 2019
- Published
Muscle fibre morphology and microarchitecture in cerebral palsy patients obtained by 3D synchrotron X-ray computed tomography
Borg, L., Sporring, Jon, Dam, Erik Bjørnager, Dahl, V. A., Dyrby, T. B., Feidenhans'l, Robert Krarup, Dahl, A. B. & Pingel, Jessica, 2019, In: Computers in Biology and Medicine. 107, p. 265-269 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Experimental cerebral malaria is associated with profound loss of both glycan and protein components of the endothelial glycocalyx
Hempel, C., Sporring, Jon & Kurtzhals, Jørgen, 2019, In: F A S E B Journal. 33, 2, p. 2058-2071Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Using a high-level parallel programming language for GPU-accelerated tomographic reconstruction
Lindhøj, M. B., Henriksen, Troels, Pedersen, L. & Sporring, Jon, 15 Jul 2019, The 2019 International Conference on High Performance Computing & Simulation: HPCS 2019. IEEE, p. 27-32 6 p. 3Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Generalizations of Ripley’s K-function with Application to Space Curves
Sporring, Jon, Waagepetersen, R. P. & Sommer, Stefan Horst, Jun 2019, Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Hong Kong, China, 2019, Proceedings: 26th International Conference, IPMI 2019, Hong Kong, China, June 2–7, 2019, Proceedings. Springer, p. 731-742 (Lecture Notes in Computer Science, Vol. 11492).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
- 2018
- Published
Collocation for diffeomorphic deformations in medical image registration
Darkner, Sune, Pai, A. S. U., Liptrot, M. G. & Sporring, Jon, 2018, In: I E E E Transactions on Pattern Analysis and Machine Intelligence. 40, 7, p. 1570-1583Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the continuous entropy of a discrete set of orientations in R3
Sporring, Jon, 2018, Copenhagen: Department of Computer Science, University of Copenhagen. 6 p. (Technical Report; No. 1, Vol. 2018).Research output: Book/Report › Report › Research
- 2017
- Published
Reducing artifacts from varying projection truncations
Borg, L., Jørgensen, J. S., Frikel, J., Quinto, E. T. & Sporring, Jon, 2017. 2 p.Research output: Contribution to conference › Paper › Research › peer-review
- Published
Reduction of variable-truncation artifacts from beam occlusion during in situ x-ray tomography
Borg, L., Jørgensen, J. S., Frikel, J. & Sporring, Jon, Dec 2017, In: Measurement Science and Technology. 28, 12, 19 p., 124004.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Towards characterizing and reducing artifacts caused by varying projection truncation
Borg, L., Jørgensen, J. S. & Sporring, Jon, 24 Feb 2017, Department of Computer Science, University of Copenhagen. 42 p. (Datalogisk Institut. Københavns Universitet. Technical Reports; No. 1, Vol. 2017).Research output: Book/Report › Report › Research
- Published
3D analysis of synaptic vesicle density and distribution after acute foot-shock stress by using serial section transmission electron microscopy
Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R., Wegener, G., Popoli, M. & Sporring, Jon, 2017, In: Journal of Microscopy. 265, 1, p. 101–110 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
3D estimation of synaptic vesicle distributions in serial section transmission electron microscopy
Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R., Wegener, G., Popoli, M. & Sporring, Jon, 2017, In: Journal of Microscopy. 265, 1, p. 101–110 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Synchrotron radiation μCT and histology evaluation of bone-to-implant contact
Neldam, C. A., Sporring, Jon, Rack, A., Lauridsen, T., Hauge, E. M., Jørgensen, H. L., Jørgensen, Niklas Rye, Feidenhans'l, Robert Krarup & Pinholt, E. M., Sep 2017, In: Journal of Cranio-Maxillofacial Surgery. 45, 9, p. 1448-1457 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimation of sample spacing in stochastic processes
Rønn-Nielsen, A., Sporring, Jon & Jensen, E. B. V., 2017, In: Image Analysis and Stereology. 36, 1, p. 43-49 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation
Michalkiewicz, M. D., Pai, A. S. U., Leung, K. K., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L., Sporring, Jon & Nielsen, Mads, 2016, Medical imaging 2016: Image processing. Styner, M. A. & Angelini, E. D. (eds.). SPIE - International Society for Optical Engineering, 6 p. 978406. (Progress in Biomedical Optics and Imaging).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Deformation-based atrophy computation by surface propagation and its application to Alzheimer’s disease
Pai, A. S. U., Sporring, Jon, Darkner, Sune, Dam, Erik Bjørnager, Lillholm, Martin, Jørgensen, D., Oh, J., Chen, G., Suhy, J., Sørensen, L. & Nielsen, Mads, 2016, In: SPIE Journal of Medical Imaging. 3, 1, 11 p., 014005.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Kernel bundle diffeomorphic image registration using stationary velocity fields and Wendland basis functions
Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2016, In: IEEE Transactions on Medical Imaging. 35, 6, p. 1369-1380 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Recovery of missing information in diffusion magnetic resonance imaging data
Siddiqi, K., Piuze-Phaneuf, E. & Sporring, Jon, 2016, Patent No. US 2016/0335786 A1, 17 Nov 2016Research output: Patent
- 2015
- Published
Analysis of shape and spatial interaction of synaptic vesicles using data from focused ion beam scanning electron microscopy (FIB-SEM)
Khanmohammadi, M., Waagepetersen, R. P. & Sporring, Jon, 2015, In: Frontiers in Neuroanatomy. 9, 11 p., 116.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Connection forms for beating the heart
Mensch, A., Piuze, E., Lehnert, L., Backermans, A. J., Sporring, Jon, Strijkers, G. J. & Siddiqi, K., 2015, Statistical Atlases and Computational Models of the Heart - Imaging and Modelling Challenges: 5th International Workshop, STACOM 2014, Held in Conjunction with MICCAI 2014, Boston, MA, USA, September 18, 2014, Revised Selected Papers. Camara, O., Mansi, T., Pop, M., Rhode, K., Sermesant, M. & Young, A. (eds.). Springer, p. 83-92 10 p. (Lecture notes in computer science, Vol. 8896).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Adaptive time-stepping in dieomorphic image registration with bounded inverse consistency error
Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015) . INRIA, p. 35-47Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Adaptive time-stepping in diffeomorphic image registration with bounded inverse consistency error
Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L. E. B. L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, The 18th International Conference on Medical Image Computing and Computer Assisted Intervention: proceedings. Technische Universität München , p. 35-47 13 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Comparison of several computational pipelines for atrophy computation in longitudinal Alzheimers studies
Pai, A. S. U., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L. E. B. L., Sporring, Jon & Nielsen, Mads, 2015. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Diffeomorphic image registration with automatic time-step adjustment
Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI). IEEE, p. 1085-1088 4 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel
Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Medical Imaging 2015: Image Processing. SPIE - International Society for Optical Engineering, 7 p. (Proceedings of S P I E - International Society for Optical Engineering, Vol. 9413).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Maurer-cartan forms for fields on surfaces: application to heart fiber geometry
Piuze, E., Sporring, Jon & Siddiqi, K., 2015, In: IEEE Transactions on Pattern Analysis and Machine Intelligence. 37, 12, p. 2492-2504 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Moving frames for heart fiber reconstruction
Piuze, E., Sporring, Jon & Siddiqi, K., 2015, Information Processing in Medical Imaging: 24th international conference, IPMI 2015, Sabhal Mor Ostaig, Isle of Skye, UK, June 28 - July 3, 2015, Proceedings. Ourselin, S., Alexander, D. C., Westin, C-F. & Cardoso, M. J. (eds.). Springer, p. 527-539 13 p. (Lecture notes in computer science, Vol. 9123).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
ID: 13303
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Virtual Trackballs Revisited
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Locally orderless registration
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Information measures in scale-spaces
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