Wouter Boomsma
Professor
Machine Learning
Universitetsparken 1
2100 København Ø
- 2016
- Published
Rapid expansion of the protein disulfide isomerase gene family facilitates the folding of venom peptides
Safavi, Helena, Li, Q., Jackson, R. L., Song, A. S., Boomsma, Wouter, Bandyopadhyay, P. K., Gruber, C. W., Purcell, A. W., Yandell, M., Olivera, B. M. & Ellgaard, Lars, 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 12, p. 3227-3232 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structure of the bacterial cytoskeleton protein bactofilin by NMR chemical shifts and sequence variation
Kassem, M. M., Wang, Y., Boomsma, Wouter & Lindorff-Larsen, Kresten, 2016, In: Biophysical Journal. 110, 11, p. 2342-2348 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Spherical convolutions and their application in molecular modelling
Boomsma, Wouter & Frellsen, J., 2017, Neural Information Processing Systems 2017. Guyon, I., Luxburg, U. V., Bengio, S., Wallach, H., Fergus, R., Vishwanathan, S. & Garnett, R. (eds.). NIPS Proceedings, 11 p. (Advances in Neural Information Processing Systems, Vol. 30).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- 2018
- Published
3D steerable CNNs: Learning rotationally equivariant features in volumetric data
Weiler, M., Geiger, M., Welling, M., Boomsma, Wouter & Cohen, T., 2018, Proceedings of the 32nd International Conference on Neural Information Processing Systems. derc ed. NIPS Proceedings, Vol. 2018. p. 10381-10392 12 p. (Advances in Neural Information Processing Systems, Vol. 31).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Monte Carlo Sampling of Protein Folding by Combining an All-Atom Physics-Based Model with a Native State Bias
Wang, Y., Tian, P., Boomsma, Wouter & Lindorff-Larsen, Kresten, 2018, In: Journal of Physical Chemistry B. 122, 49, p. 11174-11185Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Driving Structural Transitions in Molecular Simulations Using the Nonequilibrium Candidate Monte Carlo
Kurut, A., Fonseca, R. & Boomsma, Wouter, 25 Jan 2018, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 122, 3, p. 1195-1204Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Barnaba: software for analysis of nucleic acid structures and trajectories
Bottaro, S., Bussi, G., Pinamonti, G., Reisser, S., Boomsma, Wouter & Lindorff-Larsen, Kresten, 2019, In: RNA. 25, 2, p. 219-231Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Random coil chemical shifts for serine, threonine and tyrosine phosphorylation over a broad pH range
Hendus-Altenburger, R., Fernandes, Catarina, Bugge, K., Kunze, M. B. A., Boomsma, Wouter & Kragelund, Birthe Brandt, 2019, In: Journal of Biomolecular NMR. 73, 12, p. 713–725 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The PCNA interaction motifs revisited: thinking outside the PIP-box
Prestel, Andreas, Wichmann, N., Martins, J. M., Marabini, R., Kassem, N., Broendum, S. S., Otterlei, M., Nielsen, Olaf, Willemoës, Martin, Ploug, Michael, Boomsma, Wouter & Kragelund, Birthe Brandt, 2019, In: Cellular and Molecular Life Sciences. 76, 24, p. 4923-4943Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Context Matters in Disorder Based Protein Communication
Kragelund, Birthe Brandt, Prestel, Andreas, Wickmann, N., Martins, J., Boomsma, Wouter, Staby, L., Hendus-Altenburger, R. & Skriver, Karen, 2020, In: Biophysical Journal. 118, 3, suppl. 1, p. 491A 2407-Plat.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
ID: 40103911
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2307
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Protein structure validation and refinement using amide proton chemical shifts derived from quantum mechanics
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
1431
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Inference of structure ensembles of flexible biomolecules from sparse, averaged data
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
1429
downloads
Potentials of mean force for protein structure prediction vindicated, formalized and generalized
Research output: Contribution to journal › Journal article › Research › peer-review
Published