Enabling early detection of osteoarthritis from presymptomatic cartilage texture maps via transport-based learning

Research output: Contribution to journalJournal articleResearchpeer-review

Standard

Enabling early detection of osteoarthritis from presymptomatic cartilage texture maps via transport-based learning. / Kundu, Shinjini; Ashinsky, Beth G; Bouhrara, Mustapha; Dam, Erik B; Demehri, Shadpour; Shifat-E-Rabbi, Mohammad; Spencer, Richard G; Urish, Kenneth L; Rohde, Gustavo K.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 117, No. 40, 2020, p. 24709-24719.

Research output: Contribution to journalJournal articleResearchpeer-review

Harvard

Kundu, S, Ashinsky, BG, Bouhrara, M, Dam, EB, Demehri, S, Shifat-E-Rabbi, M, Spencer, RG, Urish, KL & Rohde, GK 2020, 'Enabling early detection of osteoarthritis from presymptomatic cartilage texture maps via transport-based learning', Proceedings of the National Academy of Sciences of the United States of America, vol. 117, no. 40, pp. 24709-24719. https://doi.org/10.1073/pnas.1917405117

APA

Kundu, S., Ashinsky, B. G., Bouhrara, M., Dam, E. B., Demehri, S., Shifat-E-Rabbi, M., Spencer, R. G., Urish, K. L., & Rohde, G. K. (2020). Enabling early detection of osteoarthritis from presymptomatic cartilage texture maps via transport-based learning. Proceedings of the National Academy of Sciences of the United States of America, 117(40), 24709-24719. https://doi.org/10.1073/pnas.1917405117

Vancouver

Kundu S, Ashinsky BG, Bouhrara M, Dam EB, Demehri S, Shifat-E-Rabbi M et al. Enabling early detection of osteoarthritis from presymptomatic cartilage texture maps via transport-based learning. Proceedings of the National Academy of Sciences of the United States of America. 2020;117(40):24709-24719. https://doi.org/10.1073/pnas.1917405117

Author

Kundu, Shinjini ; Ashinsky, Beth G ; Bouhrara, Mustapha ; Dam, Erik B ; Demehri, Shadpour ; Shifat-E-Rabbi, Mohammad ; Spencer, Richard G ; Urish, Kenneth L ; Rohde, Gustavo K. / Enabling early detection of osteoarthritis from presymptomatic cartilage texture maps via transport-based learning. In: Proceedings of the National Academy of Sciences of the United States of America. 2020 ; Vol. 117, No. 40. pp. 24709-24719.

Bibtex

@article{2140f8cad7eb4e4c9410478817452093,
title = "Enabling early detection of osteoarthritis from presymptomatic cartilage texture maps via transport-based learning",
abstract = "Many diseases have no visual cues in the early stages, eluding image-based detection. Today, osteoarthritis (OA) is detected after bone damage has occurred, at an irreversible stage of the disease. Currently no reliable method exists for OA detection at a reversible stage. We present an approach that enables sensitive OA detection in presymptomatic individuals. Our approach combines optimal mass transport theory with statistical pattern recognition. Eighty-six healthy individuals were selected from the Osteoarthritis Initiative, with no symptoms or visual signs of disease on imaging. On 3-y follow-up, a subset of these individuals had progressed to symptomatic OA. We trained a classifier to differentiate progressors and nonprogressors on baseline cartilage texture maps, which achieved a robust test accuracy of 78% in detecting future symptomatic OA progression 3 y prior to symptoms. This work demonstrates that OA detection may be possible at a potentially reversible stage. A key contribution of our work is direct visualization of the cartilage phenotype defining predictive ability as our technique is generative. We observe early biochemical patterns of fissuring in cartilage that define future onset of OA. In the future, coupling presymptomatic OA detection with emergent clinical therapies could modify the outcome of a disease that costs the United States healthcare system $16.5 billion annually. Furthermore, our technique is broadly applicable to earlier image-based detection of many diseases currently diagnosed at advanced stages today.",
author = "Shinjini Kundu and Ashinsky, {Beth G} and Mustapha Bouhrara and Dam, {Erik B} and Shadpour Demehri and Mohammad Shifat-E-Rabbi and Spencer, {Richard G} and Urish, {Kenneth L} and Rohde, {Gustavo K}",
year = "2020",
doi = "10.1073/pnas.1917405117",
language = "English",
volume = "117",
pages = "24709--24719",
journal = "Proceedings of the National Academy of Sciences of the United States of America",
issn = "0027-8424",
publisher = "The National Academy of Sciences of the United States of America",
number = "40",

}

RIS

TY - JOUR

T1 - Enabling early detection of osteoarthritis from presymptomatic cartilage texture maps via transport-based learning

AU - Kundu, Shinjini

AU - Ashinsky, Beth G

AU - Bouhrara, Mustapha

AU - Dam, Erik B

AU - Demehri, Shadpour

AU - Shifat-E-Rabbi, Mohammad

AU - Spencer, Richard G

AU - Urish, Kenneth L

AU - Rohde, Gustavo K

PY - 2020

Y1 - 2020

N2 - Many diseases have no visual cues in the early stages, eluding image-based detection. Today, osteoarthritis (OA) is detected after bone damage has occurred, at an irreversible stage of the disease. Currently no reliable method exists for OA detection at a reversible stage. We present an approach that enables sensitive OA detection in presymptomatic individuals. Our approach combines optimal mass transport theory with statistical pattern recognition. Eighty-six healthy individuals were selected from the Osteoarthritis Initiative, with no symptoms or visual signs of disease on imaging. On 3-y follow-up, a subset of these individuals had progressed to symptomatic OA. We trained a classifier to differentiate progressors and nonprogressors on baseline cartilage texture maps, which achieved a robust test accuracy of 78% in detecting future symptomatic OA progression 3 y prior to symptoms. This work demonstrates that OA detection may be possible at a potentially reversible stage. A key contribution of our work is direct visualization of the cartilage phenotype defining predictive ability as our technique is generative. We observe early biochemical patterns of fissuring in cartilage that define future onset of OA. In the future, coupling presymptomatic OA detection with emergent clinical therapies could modify the outcome of a disease that costs the United States healthcare system $16.5 billion annually. Furthermore, our technique is broadly applicable to earlier image-based detection of many diseases currently diagnosed at advanced stages today.

AB - Many diseases have no visual cues in the early stages, eluding image-based detection. Today, osteoarthritis (OA) is detected after bone damage has occurred, at an irreversible stage of the disease. Currently no reliable method exists for OA detection at a reversible stage. We present an approach that enables sensitive OA detection in presymptomatic individuals. Our approach combines optimal mass transport theory with statistical pattern recognition. Eighty-six healthy individuals were selected from the Osteoarthritis Initiative, with no symptoms or visual signs of disease on imaging. On 3-y follow-up, a subset of these individuals had progressed to symptomatic OA. We trained a classifier to differentiate progressors and nonprogressors on baseline cartilage texture maps, which achieved a robust test accuracy of 78% in detecting future symptomatic OA progression 3 y prior to symptoms. This work demonstrates that OA detection may be possible at a potentially reversible stage. A key contribution of our work is direct visualization of the cartilage phenotype defining predictive ability as our technique is generative. We observe early biochemical patterns of fissuring in cartilage that define future onset of OA. In the future, coupling presymptomatic OA detection with emergent clinical therapies could modify the outcome of a disease that costs the United States healthcare system $16.5 billion annually. Furthermore, our technique is broadly applicable to earlier image-based detection of many diseases currently diagnosed at advanced stages today.

U2 - 10.1073/pnas.1917405117

DO - 10.1073/pnas.1917405117

M3 - Journal article

C2 - 32958644

VL - 117

SP - 24709

EP - 24719

JO - Proceedings of the National Academy of Sciences of the United States of America

JF - Proceedings of the National Academy of Sciences of the United States of America

SN - 0027-8424

IS - 40

ER -

ID: 249297403