Alpha Shapes and Proteins
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Alpha Shapes and Proteins. / Winter, Pawel; Sterner, Henrik; Sterner, Peter.
Proceedings of 2009 Sixth International Symposium on Voronoi Diagrams. ed. / Francois Anton. IEEE Computer Society Press, 2009. p. 217-224.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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TY - GEN
T1 - Alpha Shapes and Proteins
AU - Winter, Pawel
AU - Sterner, Henrik
AU - Sterner, Peter
N1 - Conference code: 6
PY - 2009
Y1 - 2009
N2 - We provide a unified description of (weighted) alpha shapes, beta shapes and the corresponding simplicialcomplexes. We discuss their applicability to various protein-related problems. We also discuss filtrations of alpha shapes and touch upon related persistence issues.We claim that the full potential of alpha-shapes and related geometrical constructs in protein-related problems yet remains to be realized and verified. We suggest parallel algorithms for (weighted) alpha shapes, and we argue that future use of filtrations and kinetic variants for larger proteins will need such implementation.
AB - We provide a unified description of (weighted) alpha shapes, beta shapes and the corresponding simplicialcomplexes. We discuss their applicability to various protein-related problems. We also discuss filtrations of alpha shapes and touch upon related persistence issues.We claim that the full potential of alpha-shapes and related geometrical constructs in protein-related problems yet remains to be realized and verified. We suggest parallel algorithms for (weighted) alpha shapes, and we argue that future use of filtrations and kinetic variants for larger proteins will need such implementation.
U2 - 10.1109/ISVD.2009.25
DO - 10.1109/ISVD.2009.25
M3 - Article in proceedings
SN - 978-0-7695-3781-8
SP - 217
EP - 224
BT - Proceedings of 2009 Sixth International Symposium on Voronoi Diagrams
A2 - Anton, Francois
PB - IEEE Computer Society Press
Y2 - 23 June 2009 through 26 June 2009
ER -
ID: 12866415