Deep Implicit Statistical Shape Models for 3D Lumbar Vertebrae Image Delineation

Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

Spinal imaging serves as an invaluable tool in the non-invasive visualization and evaluation of spinal pathologies. A key basis for quantitative medical image analysis pertinent to clinical diagnosis and spinal surgery planning is the segmentation of vertebrae in computed tomography (CT) images. While fully convolutional networks in general dominate over medical image segmentation, with the U-Net being the architecture of choice, alternative methodologies may offer potential advancements. One promising approach is the deep implicit statistical shape model (DISSM), known for generating high-quality surfaces without discretization and for its robustness, underpinned by the use of rich and explicit anatomical priors, particularly for challenging cross-dataset clinical samples. This paper explores the utilization of DISSM for vertebra segmentation on two image datasets: a collection of 1005 CT spine images known as CTSpine1K for the shape decoder, and a set of 319 CT images known as VerSe2020 for the pose estimation encoders (translation, rotation, scaling and principal component analysis). These images and their corresponding vertebra segmentations are used for the preparation, preprocessing, and training and testing of DISSM. The preprocessing and learning techniques are based on a DISSM software package (AshStuff/dissm) with our custom modifications. The obtained segmentation results yielded an overall mean Dice coefficient of 0.767, average symmetric surface distance of 1.93 mm, and 95th percentile Hausdorff distance of 5.71 mm. We can therefore conclude that DISSM has the potential to further advance the field of vertebra segmentation.

Original languageEnglish
Title of host publicationMedical Imaging 2024 : Image Processing
EditorsOlivier Colliot, Jhimli Mitra
PublisherSPIE
Publication date2024
Article number1292638
ISBN (Electronic)9781510671560
DOIs
Publication statusPublished - 2024
EventMedical Imaging 2024: Image Processing - San Diego, United States
Duration: 19 Feb 202422 Feb 2024

Conference

ConferenceMedical Imaging 2024: Image Processing
LandUnited States
BySan Diego
Periode19/02/202422/02/2024
SponsorGE Research, Guerbet Group, Merck and Co., Inc., Philips Research, The Society of Photo-Optical Instrumentation Engineers (SPIE)
SeriesProgress in Biomedical Optics and Imaging - Proceedings of SPIE
Volume12926
ISSN1605-7422

Bibliographical note

Publisher Copyright:
© 2024 SPIE.

    Research areas

  • computed tomography (CT), deep implicit statistical shape model (DISSM), Deep learning, principal component analysis (PCA), vertebra segmentation

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