Sune Darkner
Lektor
Image Analysis, Computational Modelling and Geometry
Universitetsparken 1, 2100 København Ø
- 2020
- Udgivet
- Udgivet
Restoring drifted electron microscope volumes using synaptic vesicles at sub-pixel accuracy
Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 2020, I : Communications Biology. 3, 1, 7 s., ´81.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
- 2019
- Udgivet
Deterministic Group Tractography with Local Uncertainty Quantification
Holm, Andreas Nugaard, Feragen, Aasa, Dela Haije, Tom & Darkner, Sune, 2019, Computational Diffusion: International MICCAI Workshop, Granada,. Bonet-Carne, E., Grussu, F., Ning, L., Sepehrband, F. & Tax, C. M. W. (red.). 226249 udg. Springer, s. 377-386 (Mathematics and Visualization).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Data Driven Inverse Kinematics of Soft Robots using Local Models
Holsten, Fredrik Dalland, Engell-norregard, M. P., Darkner, Sune & Erleben, Kenny, 2019, 2019 International Conference on Robotics and Automation (ICRA). IEEE, s. 6251-6257Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
TopAwaRe: Topology-Aware Registration
Nielsen, R. K., Darkner, Sune & Feragen, Aasa, 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (red.). Springer VS, s. 364-372 9 s. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Bind 11765 LNCS).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
U-Time: A Fully Convolutional Network for Time Series Segmentation Applied to Sleep Staging
Perslev, Mathias, Hejselbak Jensen, M., Darkner, Sune, Jørgen Jennum, P. & Igel, Christian, 1 okt. 2019, Advances in Neural Information Processing Systems 32 (NIPS 2019). NIPS Proceedings, Bind 32. s. 4415-4426Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Drift Corrector Software
Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 20 aug. 2019Publikation: Bidrag der ikke har en tekstform › Softwareprogram › Forskning
- 2018
- Udgivet
Collocation for diffeomorphic deformations in medical image registration
Darkner, Sune, Pai, Akshay Sadananda Uppinakudru, Liptrot, M. G. & Sporring, Jon, 2018, I : I E E E Transactions on Pattern Analysis and Machine Intelligence. 40, 7, s. 1570-1583Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
- Udgivet
Safety and Efficacy of Mesenchymal Stem Cells for Radiation-Induced Xerostomia: A Randomized, Placebo-Controlled Phase 1/2 Trial (MESRIX)
Grønhøj, C., Jensen, D. H., Vester-Glowinski, P., Jensen, S. B., Bardow, A., Oliveri, R. S., Fog, L. M., Specht, Lena, Thomsen, Carsten, Darkner, Sune, Jensen, M., Müller, V., Kiss, K., Agander, T., Andersen, E., Fischer-Nielsen, Anne & von Buchwald, Christian, 1 jul. 2018, I : International Journal of Radiation Oncology, Biology, Physics. 101, 3, s. 581-592 12 s.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
- Udgivet
Brain Segmentation in Rodent MR-Images Using Convolutional Neural Networks
Sigurdsson, Björn, Darkner, Sune, Sommer, Stefan Horst, Mortensen, Kristian Nygaard, Sanggaard, S., Kostrikov, S. & Nedergaard, Maiken, 2018.Publikation: Konferencebidrag › Konferenceabstrakt til konference › Forskning › fagfællebedømt
- 2017
- Udgivet
First-in-man mesenchymal stem cells for radiation-induced xerostomia (MESRIX): study protocol for a randomized controlled trial.
Grønhøj, C., Jensen, D. H., Glovinski, P. V., mpw981, M., Jensen, A. B., Oliveri, R. S., Specht, Lena, Thomsen, Carsten, Darkner, Sune, Kiss, K., Fischer-Nielsen, Anne & von Buchwald, Christian, 2017, I : Trials. 18, 1, 10 s., 108.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
- Udgivet
Density-based non-rigid registration of diffusion-weighted images
Jensen, H. G., Lauze, Francois Bernard, Nielsen, Mads & Darkner, Sune, apr. 2017.Publikation: Konferencebidrag › Konferenceabstrakt til konference › Forskning › fagfællebedømt
- Udgivet
3D analysis of synaptic vesicle density and distribution after acute foot-shock stress by using serial section transmission electron microscopy
Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R., Wegener, G., Popoli, M. & Sporring, Jon, 2017, I : Journal of Microscopy. 265, 1, s. 101–110 10 s.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
- Udgivet
Streamlet Tractography
Liptrot, M. G., Darkner, Sune, Feragen, Aasa & Lauze, Francois Bernard, apr. 2017.Publikation: Konferencebidrag › Konferenceabstrakt til konference › Forskning › fagfællebedømt
- Udgivet
A statistical model for simultaneous template estimation, bias correction, and registration of 3D brain images
Pai, Akshay Sadananda Uppinakudru, Sommer, Stefan Horst, Raket, L. L., Kühnel, Line, Darkner, Sune, xfj310, xfj310 & Nielsen, Mads, 2017, Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging: MICCAI 2016 International Workshops, MCV and BAMBI, Athens, Greece, October 21, 2016, Revised Selected Papers. Müller, H., Kelm, B. M., Arbel, T., Cai, W., Cardoso, M. J., Langs, G., Menze, B., Metaxas, D., Montillo, A., Wells, W. M., Zhang, S., Chung, A. C. S., Jenkinson, M. & Ribbens, A. (red.). Springer, s. 151-159 9 s. (Lecture notes in computer science, Bind 10081).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Hippocampal texture predicts rate of cognitive decline in mild cognitive impairment
Pai, Akshay Sadananda Uppinakudru, Pillai, J. A., xfj310, xfj310, Darkner, Sune, Sommer, Stefan Horst & Nielsen, Mads, jul. 2017, I : Alzheimer's & Dementia. 13, 7, supplement, s. P1356 1 s., P4-225.Publikation: Bidrag til tidsskrift › Konferenceabstrakt i tidsskrift › Forskning
- 2016
- Udgivet
Finding significantly connected voxels based on histograms of connection strengths
Kasenburg, N., Pedersen, M. V. & Darkner, Sune, 2016, Medical Imaging 2016: Image Processing. Styner, M. A. & Angelini, E. D. (red.). SPIE - International Society for Optical Engineering, 7 s. 978431. (Progress in Biomedical Optics and Imaging; Nr. 39, Bind 17).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Structural parcellation of the thalamus using shortest-path tractography
Kasenburg, N., Darkner, Sune, Hahn, U., Liptrot, M. G. & Feragen, Aasa, 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI). IEEE, s. 559-563 5 s. 7493330Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation
Michalkiewicz, M. D., Pai, Akshay Sadananda Uppinakudru, Leung, K. K., Sommer, Stefan Horst, Darkner, Sune, xfj310, xfj310, Sporring, Jon & Nielsen, Mads, 2016, Medical imaging 2016: Image processing. Styner, M. A. & Angelini, E. D. (red.). SPIE - International Society for Optical Engineering, 6 s. 978406. (Progress in Biomedical Optics and Imaging).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Deformation-based atrophy computation by surface propagation and its application to Alzheimer’s disease
Pai, Akshay Sadananda Uppinakudru, Sporring, Jon, Darkner, Sune, Dam, Erik Bjørnager, Lillholm, Martin, Jørgensen, D., Oh, J., Chen, G., Suhy, J., xfj310, xfj310 & Nielsen, Mads, 2016, I : SPIE Journal of Medical Imaging. 3, 1, 11 s., 014005.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
- Udgivet
Kernel bundle diffeomorphic image registration using stationary velocity fields and Wendland basis functions
Pai, Akshay Sadananda Uppinakudru, Sommer, Stefan Horst, xfj310, xfj310, Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2016, I : IEEE transactions on medical imaging. 35, 6, s. 1369-1380 12 s.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
- Udgivet
The minimal energetic requirement of sustained awareness after brain injury
Stender, Johan, Mortensen, Kristian Nygaard, Thibaut, A., Darkner, Sune, Laureys, S., Gjedde, Albert & Kupers, Ron, 6 jun. 2016, I : Current Biology. 26, 11, s. 1494-1499 6 s.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
- 2015
- Udgivet
Locally orderless registration for diffusion weighted images
Jensen, H. G., Lauze, Francois Bernard, Nielsen, Mads & Darkner, Sune, 2015, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015: 18th international conference, Munich, Germany, October 5-9, 2015, Proceedings, Part II. Navab, N., Hornegger, J., Wells, W. M. & Frangi, A. F. (red.). Springer, s. 305-312 8 s. (Lecture notes in computer science, Bind 9350).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Multimodal brain extraction from structural MRI using co-registered FDG-PET
Jensen, H. G., Federspiel, F. V. K., Ptito, M., Nielsen, Mads, Gjedde, Albert, Keller, S. H., Law, Ian, Kupers, Ron & Darkner, Sune, 2015. 12 s.Publikation: Konferencebidrag › Paper › Forskning
- Udgivet
Automatic correction of dental artifacts in PET/MRI
Ladefoged, C. N., Andersen, F. L., Keller, S., Beyer, T., Law, I., Højgaard, Liselotte, Darkner, Sune & Lauze, Francois Bernard, 2015, I : SPIE Journal of Medical Imaging. 2, 2, 13 s., 024009.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
- Udgivet
Adaptive time-stepping in dieomorphic image registration with bounded inverse consistency error
Pai, Akshay Sadananda Uppinakudru, Klein, S., Sommer, Stefan Horst, xfj310, xfj310, Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015) . INRIA, s. 35-47Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Adaptive time-stepping in diffeomorphic image registration with bounded inverse consistency error
Pai, Akshay Sadananda Uppinakudru, Klein, S., Sommer, Stefan Horst, xfj310, xfj310, Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, The 18th International Conference on Medical Image Computing and Computer Assisted Intervention: proceedings. Technische Universität München , s. 35-47 13 s.Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Comparison of several computational pipelines for atrophy computation in longitudinal Alzheimers studies
Pai, Akshay Sadananda Uppinakudru, Sommer, Stefan Horst, Darkner, Sune, xfj310, xfj310, Sporring, Jon & Nielsen, Mads, 2015. 1 s.Publikation: Konferencebidrag › Konferenceabstrakt til konference › Forskning › fagfællebedømt
- Udgivet
Diffeomorphic image registration with automatic time-step adjustment
Pai, Akshay Sadananda Uppinakudru, Klein, S., Sommer, Stefan Horst, Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on. IEEE, s. 1085-1088 4 s.Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel
Pai, Akshay Sadananda Uppinakudru, Sommer, Stefan Horst, xfj310, xfj310, Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015. 1 s.Publikation: Konferencebidrag › Konferenceabstrakt til konference › Forskning › fagfællebedømt
- 2014
- Udgivet
Stepwise inverse consistent Euler’s scheme for diffeomorphic image registration
Pai, Akshay Sadananda Uppinakudru, Sommer, Stefan Horst, Darkner, Sune, xfj310, xfj310, Sporring, Jon & Nielsen, Mads, 2014, Biomedical Image Registration: 6th International Workshop, WBIR 2014, London, UK, July 7-8, 2014. Proceedings. Ourselin, S. & Modat, M. (red.). Springer, s. 223-230 8 s. (Lecture notes in computer science, Bind 8545).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
White matter hypointensity growth rate correlates with rate of brain atrophy
Pai, Akshay Sadananda Uppinakudru, xfj310, xfj310, Darkner, Sune, Sporring, Jon, Rostrup, E. & Nielsen, Mads, 2014, I : Alzheimer's & Dementia. 10, 4, Supplement, s. P75-P76 2 s., IC-P-131.Publikation: Bidrag til tidsskrift › Konferenceabstrakt i tidsskrift › Forskning › fagfællebedømt
- Udgivet
White matter hypointensity growth rate correlates with rate of brain atrophy
Pai, Akshay Sadananda Uppinakudru, xfj310, xfj310, Darkner, Sune, Sporring, Jon, Rostrup, E. & Nielsen, Mads, 2014, I : Alzheimer's & Dementia. 10, 4, Supplement, s. P414 1 s., P1-285.Publikation: Bidrag til tidsskrift › Konferenceabstrakt i tidsskrift › Forskning › fagfællebedømt
- Udgivet
Automatic FDG-PET-based tumor and metastatic lymph node segmentation in cervical cancer
Rodríguez Arbonès, D., Jensen, H. G., Loft, A., af Rosenschöld, P. M., Hansen, Anders Elias, Igel, Christian & Darkner, Sune, 2014, Medical Imaging 2014: Image Processing. Ourselin, S. & Styner, M. A. (red.). SPIE - International Society for Optical Engineering, 8 s. 903441. (Progress in Biomedical Optics and Imaging; Nr. 35, Bind 15).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Estimating the thickness of ultra thin sections for electron microscopy by image statistics
Sporring, Jon, Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R. & Jensen, E. B. V., 2014, 2014 IEEE International Symposium on Biomedical Imaging. IEEE, s. 157-160 4 s.Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Conforming contact manifolds for multibody simulations
Visseq, V., Bonde, U., Erleben, Kenny & Darkner, Sune, 2014. 2 s.Publikation: Konferencebidrag › Konferenceabstrakt til konference › Forskning
- 2013
- Udgivet
FDG-PET template MNI152 1mm
Darkner, Sune, 2013Publikation: Bidrag der ikke har en tekstform › Datasæt › Forskning
- Udgivet
Locally orderless registration
Darkner, Sune & Sporring, Jon, 2013, I : I E E E Transactions on Pattern Analysis and Machine Intelligence. 35, 6, s. 1437-1450 14 s.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
- Udgivet
3D estimation of synaptic vesicle distributions in serial section transmission electron microscopy
Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R. & Sporring, Jon, 8 jun. 2013. 1 s.Publikation: Konferencebidrag › Konferenceabstrakt til konference › Forskning › fagfællebedømt
- Udgivet
Evaluation of WBAA with registration-based cube propagation for brain atrophy quantification
Lillholm, Martin, Pai, Akshay Sadananda Uppinakudru, xfj310, xfj310, Nielsen, Mads, Sporring, Jon, Darkner, Sune & Dam, E., 2013. 1 s.Publikation: Konferencebidrag › Konferenceabstrakt til konference › Forskning › fagfællebedømt
- Udgivet
Automatic measurement of wrist synovitis from contrast-enhanced MRI: a registration-centered approach
Mysling, P., Darkner, Sune, Sporring, Jon, Dam, E. & Lillholm, Martin, 2013, Medical Imaging 2013: Image Processing. Ourselin, S. & Haynor, D. R. (red.). SPIE - International Society for Optical Engineering, 6 s. 86692U. (Progress in Biomedical Optics and Imaging; Nr. 36, Bind 14).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Cube propagation for focal brain atrophy estimation
Pai, Akshay Sadananda Uppinakudru, xfj310, xfj310, Darkner, Sune, Mysling, P., Jørgensen, D. R., Dam, E. B., Lillholm, Martin, Oh, J., Chen, G., Suhy, J., Sporring, Jon & Nielsen, Mads, 2013, 2013 IEEE 10th International Symposium on Biomedical Imaging. IEEE, s. 402-405 4 s.Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Localized cerebral atrophy acceleration during Alzheimer’s disease
Pai, Akshay Sadananda Uppinakudru, xfj310, xfj310, Darkner, Sune, Lillholm, Martin, Dam, E. B., Sporring, Jon & Nielsen, Mads, 2013, I : Alzheimer's & Dementia. 9, 4, Supplement, s. P36–P37 2 s., IC-P-059.Publikation: Bidrag til tidsskrift › Konferenceabstrakt i tidsskrift › Forskning › fagfællebedømt
- Udgivet
Localized cerebral atrophy acceleration during Alzheimer’s disease
Pai, Akshay Sadananda Uppinakudru, xfj310, xfj310, Darkner, Sune, Lillholm, Martin, Dam, E. B., Sporring, Jon & Nielsen, Mads, 2013, I : Alzheimer's & Dementia. 9, 4, Supplement, s. P151 1 s., O1-10-06.Publikation: Bidrag til tidsskrift › Konferenceabstrakt i tidsskrift › Forskning › fagfællebedømt
- Udgivet
Higher-order momentum distributions and locally affine LDDMM registration
Sommer, Stefan Horst, Nielsen, Mads, Darkner, Sune & Pennec, X., 2013, I : S I A M Journal on Imaging Sciences. 6, 1, s. 341-367 27 s.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
- Udgivet
Hippocampal texture predicts one-year hippocampal atrophy in mild cognitively impaired subjects
xfj310, xfj310, Pai, Akshay Sadananda Uppinakudru, Mysling, P., Darkner, Sune, Chen, G., Oh, J., Suhy, J., Igel, Christian & Nielsen, Mads, 2013. 1 s.Publikation: Konferencebidrag › Poster › Forskning › fagfællebedømt
- 2012
- Udgivet
Jet-based local image descriptors
Boesen Lindbo Larsen, A., Darkner, Sune, Dahl, A. L. & Pedersen, Kim Steenstrup, 2012, Computer Vision – ECCV 2012: 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part III. Fitzgibbon, A., Lazebnik, S., Perona, P., Sato, Y. & Schmid, C. (red.). Springer, s. 638-650 13 s. (Lecture notes in computer science, Bind 7574).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Data driven constraints for the SVM
Darkner, Sune & Clemmensen, L. H., 2012, Machine Learning in Medical Imaging: Third International Workshop, MLMI 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 1, 2012, Revised Selected Papers. Wang, F., Shen, D., Yan, P. & Suzuki, K. (red.). Springer, s. 70-77 8 s. (Lecture notes in computer science, Bind 7588).Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
- Udgivet
Locally orderless registration code: fast normalized mutual information and P-Norm for MATLAB
Darkner, Sune & Sporring, Jon, 2012Publikation: Bidrag der ikke har en tekstform › Softwareprogram › Forskning
- Udgivet
Evaluation of bias in brain atrophy estimation
Pai, Akshay Sadananda Uppinakudru, Darkner, Sune, xfj310, xfj310, Erleben, L. L., Mysling, P., Sporring, Jon, Dam, E. & Nielsen, Mads, 2012, NIBAD '12: MICCAI 2012 Workshop on Novel Imaging Biomarkers for Alzheimer’s Disease and Related Disorders. Wang, L., Yushkevich, P. & Ourselin, S. (red.). MICCAI , s. 198-206 9 s.Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › fagfællebedømt
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