Department of Computer Science

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  1. Published

    Mean Field Network Based Graph Refinement with Application to Airway Tree Extraction

    Selvan, Raghav, Welling, M., Pedersen, J. J. H., Petersen, Jens & de Bruijne, Marleen, 2018, Medical Image Computingand Computer AssistedIntervention – MICCAI 2018: 21st International Conference, Granada, Spain, September 16–20, 2018, Proceedings, Part II. Frangi, A. F., Schnabel, J. A., Davatzikos, C., Alberola-López, C. & Fichtinger, G. (eds.). Springer, p. 750-758 (Lecture notes in computer science, Vol. 11071).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  2. Published

    Multiple hypothesis tracking based extraction of airway trees from CT data: using statistical ranking of template-matched hypotheses

    Selvan, Raghav, Petersen, Jens & de Bruijne, Marleen, 2016. 1 p.

    Research output: Contribution to conference › Poster › Research › peer-review

  3. Published

    The disease modifying osteoarthritis drug (DMOAD): Is it in the horizon?

    Qvist, P., Bay-Jensen, A., Christiansen, C., Dam, Erik Bjørnager, Pastoureau, P. & Karsdal, M. A., Jul 2008, In: Pharmacological Research. 58, 1, p. 1-7 7 p.

    Research output: Contribution to journal › Review › Research › peer-review

  4. Published

    Solving the uncalibrated photometric stereo problem using total variation

    Quéau, Y., Lauze, Francois Bernard & Durou, J., 2013, Scale Space and Variational Methods in Computer Vision: 4th International Conference, SSVM 2013, Schloss Seggau, Leibnitz, Austria, June 2-6, 2013. Proceedings. Kuijper, A., Bredies, K., Pock, T. & Bischof, H. (eds.). Springer, p. 270-281 12 p. (Lecture notes in computer science, Vol. 7893).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  5. Published

    A L1-TV algorithm for robust perspective photometric stereo with spatially-varying lightings

    Quéau, Y., Lauze, Francois Bernard & Durou, J., 2015, Scale space and variational methods in computer vision: 5th International Conference, SSVM 2015, Lège-Cap Ferret, France, May 31 - June 4, 2015, Proceedings. Springer, p. 498-510 13 p. (Lecture notes in computer science, Vol. 9087).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  6. Published

    Fusion de données RVB-D par stéréophotométrie colorée

    Quéau, Y., Durix, B., Lucas, T., Boumaza, J., Durou, J. & Lauze, Francois Bernard, 2017, In: hal.archives-ouvertes.fr. p. 1-25 hal-01409663.

    Research output: Contribution to journal › Journal article › Research

  7. Published

    A non-convex variational approach to photometric stereo under inaccurate lighting

    Quéau, Y., Wu, T., Lauze, Francois Bernard, Durou, J. & Cremers, D., Jul 2017, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR). IEEE, p. 350-359 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  8. Published

    Fusion de données RVB-D par stéréophotométrie colorée

    Quéau, Y., Durix, B., Lucas, T., Boumaza, J., Durou, J. & Lauze, Francois Bernard, 2016. 8 p.

    Research output: Contribution to conference › Paper › Research

  9. Published

    Solving uncalibrated photometric stereo using total variation

    Quéau, Y., Lauze, Francois Bernard & Durou, J., 2015, In: Journal of Mathematical Imaging and Vision. 52, 1, p. 87-107 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    LED-based Photometric Stereo: Modeling, Calibration and Numerical Solutions

    Quéau, Y., Durix, B., Wu, T., Cremers, D., Lauze, Francois Bernard & Durou, J., 2018, In: Journal of Mathematical Imaging and Vision. 60, 3, p. 313-340

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Computerlingvistik: Metoder til visualisering af regional variation i sociale medier

    Quist, Pia & Hovy, D., 2018, Sociale Medier og Sprog: Analytiske tilgange. Stæhr, A. & Mortensen, K. K. (eds.). Frederiksberg: Samfundslitteratur, p. 121-143 23 p. (Medier, Kommunikation, Journalistik).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  12. Published

    A framework for optimizing measurement weight maps to minimize the required sample size

    Qazi, A. A., Jørgensen, D. R., Lillholm, Martin, Loog, M., Nielsen, Mads & Dam, Erik Bjørnager, 2010, In: Medical Image Analysis. 14, 3, p. 255-264 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Osteoarthritic cartilage is more homogeneous than healthy cartilage: identification of a superior region of interest colocalized with a major risk factor for osteoarthritis

    Qazi, A. A., Dam, Erik Bjørnager, Nielsen, Mads, Karsdal, M. A., Pettersen, P. C. & Christiansen, C., Oct 2007, In: Academic Radiology. 14, 10, p. 1209-20 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    On the k-independence required by linear probing and minwise independence

    Pǎtraşcu, M. & Thorup, Mikkel, 2016, In: ACM Transactions on Algorithms. 12, 1, 27 p., 8.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Privacy-Preserving Crowd-Sourcing of Web Searches with Private Data Donor

    Primault, V., Lampos, V., Cox, Ingemar Johansson & De Cristofaro, E., 2019, WWW '19: The Web Conference 2019. Association for Computing Machinery, p. 1487-1497

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  16. Published

    Improving the Choice of Organizational Change Strategy

    Pries-Heje, J., Carstensen, Peter, Johansen, J. & Vinter, O., 2018, Systems, Software and Services Process Improvement: 25th European Conference, EuroSPI 2018, Proceedings. Springer, p. 83-94 (Communications in Computer and Information Science, Vol. 896).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  17. Published

    The PCNA interaction motifs revisited: thinking outside the PIP-box

    Prestel, Andreas, Wichmann, N., Martins, J. M., Marabini, R., Kassem, N., Broendum, S. S., Otterlei, M., Nielsen, Olaf, Willemoës, Martin, Ploug, Michael, Boomsma, Wouter & Kragelund, Birthe Brandt, 2019, In: Cellular and Molecular Life Sciences. 76, 24, p. 4923-4943

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Deep Feature Learning and Cascaded Classifier for Large Scale Data

    Prasoon, A., 2014, Department of Computer Science, Faculty of Science, University of Copenhagen. 117 p.

    Research output: Book/Report › Ph.D. thesis › Research

  19. Published

    Femoral cartilage segmentation in knee MRI scans using two stage voxel classification

    Prasoon, A., Igel, Christian, Loog, M., Lauze, Francois Bernard, Dam, E. & Nielsen, Mads, 2013, 35th Annual International Conference of the IEEE; Engineering in Medicine and Biology Society (EMBC), 2013. IEEE, p. 5469-5472 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  20. Published

    Deep feature learning for knee cartilage segmentation using a triplanar convolutional neural network

    Prasoon, A., Petersen, P. K., Igel, Christian, Lauze, Francois Bernard, Dam, Erik Bjørnager & Nielsen, Mads, 2013, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013: 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part II. Mori, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (eds.). Springer, p. 246-253 8 p. (Lecture notes in computer science, Vol. 8150).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  21. Published

    Automatic galaxy classification via machine learning techniques: Parallelized rotation/flipping INvariant Kohonen maps (PINK)

    Polsterer, K. L., Gieseke, Fabian Cristian & Igel, Christian, 2015, Astronomical Data Analysis Software and Systems: Proceedings of a meeting held at Calgary, Alberta, Canada 5-9 October 2014. Taylor, A. R. & Rosolowsky, E. (eds.). Astronomical Society of the Pacific, Vol. 24. p. 81-86 6 p. (ASP Conference Series, Vol. 495).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  22. Published

    Improving the performance of photometric regression models via massive parallel feature selection

    Polsterer, K. L., Gieseke, Fabian Cristian, Igel, Christian & Goto, T., 2014, Astronomical Data Analysis Software and Systems XXIII. Manset, N. & Forshay, P. (eds.). Astronomical Society of the Pacific, Vol. 485. p. 425-428 4 p. (Astronomical Society of the Pacific. Conference Proceedings, Vol. 485).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  23. Published

    Parallelized rotation and flipping INvariant Kohonen maps (PINK) on GPUs

    Polsterer, K. L., Gieseke, Fabian Cristian, Igel, Christian, Doser, B. & Gianniotis, N., 2016, Proceedings of the 24th European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning (ESANN 2016). i6doc.com, p. 405-410 6 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  24. Published

    How we Guide, Write, and Cite at CHI

    Pohl, H. & Mottelson, A., 2019, CHI Conference on Human Factors in Computing Systems Extended Abstracts - CHI '19 EA. Association for Computing Machinery, p. 1-10 10 p. alt01

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  25. Published

    Charting Subtle Interaction in the HCI Literature

    Pohl, H., Muresan, A. & Hornbæk, Kasper, 2019, Proceedings of the 2019 CHI Conference on Human Factors in Computing Systems - CHI '19. Association for Computing Machinery, 15 p. 418

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  26. Published

    Wanding Through Space: Interactive Calibration for Electric Muscle Stimulation

    Pohl, H., Hornbæk, Kasper & Knibbe, J., 2018, Proceedings of the 9th Augmented Human International Conference, AH 2018. Association for Computing Machinery, 5 p. a19

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  27. Published

    Moving frames for heart fiber geometry

    Piuze, E., Sporring, Jon & Siddiqi, K., 2013, Information Processing in Medical Imaging: 23rd International Conference, IPMI 2013, Asilomar, CA, USA, Proceedings. Gee, J. C., Joshi, S., Pohl, K. M., Wells, W. M. & Zöllei, L. (eds.). Springer, p. 524-535 12 p. (Lecture notes in computer science, Vol. 7917).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  28. Published

    Cardiac fiber inpainting using cartan forms

    Piuze, E., Lombaert, H., Sporring, Jon & Siddiqi, K., 2013, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013: 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part II. Moru, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (eds.). Springer, p. 509-517 9 p. (Lecture notes in computer science, Vol. 8150).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  29. Published

    Maurer-cartan forms for fields on surfaces: application to heart fiber geometry

    Piuze, E., Sporring, Jon & Siddiqi, K., 2015, In: IEEE Transactions on Pattern Analysis and Machine Intelligence. 37, 12, p. 2492-2504 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Moving frames for heart fiber reconstruction

    Piuze, E., Sporring, Jon & Siddiqi, K., 2015, Information Processing in Medical Imaging: 24th international conference, IPMI 2015, Sabhal Mor Ostaig, Isle of Skye, UK, June 28 - July 3, 2015, Proceedings. Ourselin, S., Alexander, D. C., Westin, C-F. & Cardoso, M. J. (eds.). Springer, p. 527-539 13 p. (Lecture notes in computer science, Vol. 9123).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  31. Published

    Atlases of cardiac fiber differential geometry

    Piuze, E., Lombaert, H., Sporring, Jon, Strijkers, G. J., Bakermans, A. J. & Siddiqi, K., 2013, Functional Imaging and Modeling of the Heart: 7th International Conference, FIMH 2013, London, UK, June 20-22, 2013. Proceedings. Ourselin, S., Rueckert, D. & Smith, N. (eds.). Springer, p. 442-449 8 p. (Lecture notes in computer science, Vol. 7945).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  32. Published

    Tolerance analysis for 0-1 knapsack problems

    Pisinger, D. & Saidi, A., 1 May 2017, In: European Journal of Operational Research. 258, 3, p. 866-876 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Using Kinect for 2D and 3D pointing tasks: performance evaluation

    Pino, A., Tzemis, E., Ioannou, N. & Kouroupetroglou, G., 2013, Human-Computer Interaction. Interaction Modalities and Techniques: 15th International Conference, HCI International 2013, Las Vegas, NV, USA, July 21-26, 2013, Proceedings, Part IV. Kurosu, M. (ed.). Springer, p. 358-367 10 p. (Lecture notes in computer science, Vol. 8007).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  34. Published

    Inflammatory pathway analytes predicting rapid cognitive decline in MCI stage of Alzheimer’s disease

    Pillai, J. A., Bena, J., Bebek, G., Bekris, L. M., Bonner-Jackson, A., Kou, L., Pai, A., Sørensen, L., Nielsen, Mads, Rao, S. M., Chance, M., Lamb, B. T. & Leverenz, J. B., 2020, In: Annals of Clinical and Translational Neurology. 7, 7, p. 1225-1239 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Persistent hippocampal predominant atrophy in pre dementia as a marker for slower functional decline

    Pillai, J., Pai, A. S. U., Sørensen, L. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P538-P539 2 p., P2-186.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  36. Published

    Persistent hippocampal predominant atrophy in pre dementia as a marker for slower functional decline

    Pillai, J., Pai, A. S. U., Sørensen, L. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P34-P35 2 p., IC-P-061.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  37. Published

    Copilot: monitoring embedded systems

    Pike, L., Wegmann, N., Niller, S. & Goodloe, A., 2013, In: Innovations in Systems and Software Engineering. 9, 4, p. 235-255 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Hybrid LSH: faster near neighbors reporting in high-dimensional space

    Pham, D. N., 2017, Advances in Database Technology — EDBT 2017: proceedings of the 20th International Conference on Extending Database Technology. Markl, V., Orlando, S., Mitschang, B., Andritsos, P., Sattler, K-U. & Breß, S. (eds.). OpenProceedings.org, p. 454-457 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  39. Published

    OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data

    Pfeuffer, J., Bielow, C., Wein, S., Jeong, K., Netz, E., Walter, A., Alka, O., Nilse, L., Colaianni, P. D., McCloskey, D., Kim, J., Rosenberger, G., Bichmann, L., Walzer, M., Veit, J., Boudaud, B., Bernt, M., Patikas, N., Pilz, M., Startek, M. P. & 12 others, Kutuzova, Svetlana, Heumos, L., Charkow, J., Sing, J. C., Feroz, A., Siraj, A., Weisser, H., Dijkstra, T. M. H., Perez-Riverol, Y., Röst, H., Kohlbacher, O. & Sachsenberg, T., 2024, In: Nature Methods. 21, 3, p. 365–367

    Research output: Contribution to journal › Letter › Research › peer-review

  40. Published

    Parallel assessment of the impact of different hormone replacement therapies on breast density by radiologist-and computer-based analyses of mammograms

    Pettersen, P. C., Raundahl, J., Loog, M., Nielsen, Mads, Tankó, L. B. & Christiansen, C., 2008, In: Climacteric. 11, 2, p. 135-143 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Differential effect of extracellular calcium on the Na(+)-K+ pump activity in intact polymorphonuclear leucocytes and erythrocytes

    Petersen, René Horsleben, Knudsen, T. & Johansen, T., 11 Feb 1991, In: FEBS Letters. 279, 1, p. 153-6 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    A static SMC sampler on shapes for the automated segmentation of aortic calcifications

    Petersen, P. K., Nielsen, Mads & Brandt, S. S., 2010, Computer Vision – ECCV 2010: 11th European Conference on Computer Vision, Heraklion, Crete, Greece, September 5-11, 2010, Proceedings, Part IV. Daniilidis, K., Maragos, P. & Paragios, N. (eds.). Springer, p. 666-679 14 p. (Lecture notes in computer science, Vol. 6314).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  43. Published

    Breast tissue segmentation and mammographic risk scoring using deep learning

    Petersen, P. K., Nielsen, Mads, Diao, P., Karssemeijer, N. & Lillholm, Martin, 2014, Breast imaging: 12th International Workshop, IWDM 2014, Gifu City, Japan, June 29 – July 2, 2014. Proceedings. Fujita, H., Hara, T. & Muramatsu, C. (eds.). Springer Science+Business Media, p. 88-94 7 p. (Lecture notes in computer science, Vol. 8539).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  44. Published

    Breast density scoring with multiscale denoising autoencoders

    Petersen, P. K., Chernoff, K., Nielsen, Mads & Ng, A. Y., 2012. 8 p.

    Research output: Contribution to conference › Paper › Research › peer-review

  45. Published

    Bayesian Image Segmentation with Multiscale Feature Learning

    Petersen, P. K., 2012, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  46. Published

    Association of Socioeconomic Status With Dementia Diagnosis Among Older Adults in Denmark

    Petersen, Jindong Ding, Wehberg, S., Packness, A., Svensson, N. H., Hyldig, N., Raunsgaard, S., Andersen, M. K., Ryg, J., Mercer, S. W., Søndergaard, J. & Waldorff, Frans Boch, 2021, In: JAMA network open. 4, 5, 13 p., 2110432.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Manual airway labeling has limited reproducibility

    Petersen, Jens, Feragen, A., Thomsen, L. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2013. 10 p.

    Research output: Contribution to conference › Poster › Research › peer-review

  48. Published

    Analysis of airways in computed tomography

    Petersen, Jens, 2014, Department of Computer Science, Faculty of Science, University of Copenhagen. 135 p.

    Research output: Book/Report › Ph.D. thesis › Research

  49. Published

    Opfront: optimal front segmentation of images

    Petersen, Jens, 2014

    Research output: Non-textual form › Computer programme › Research

  50. Published

    The effect of inspiration on airway dimensions measured in CT images from the Danish Lung Cancer Screening Trial

    Petersen, Jens, Wille, M., Thomsen, L., Feragen, A., Dirksen, A. & de Bruijne, Marleen, 2013, In: Insights into Imaging. 4, Supplement 1, p. 183 1 p., B-0163.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

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