Department of Computer Science

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  1. 2022
  2. Published

    Auto-segmentation of Hip Joints Using MultiPlanar UNet with Transfer Learning

    Xu, Peidi, nsv780, nsv780, Gholamalizadeh, T., Nielsen, Michael Bachmann, Erleben, Kenny & Darkner, Sune, 2022, Medical Image Learning with Limited and Noisy Data: First International Workshop, MILLanD 2022 Held in Conjunction with MICCAI 2022 Singapore, September 22, 2022 Proceedings. Zamzmi, G., Antani, S., Rajaraman, S., Xue, Z., Bagci, U. & Linguraru, M. G. (eds.). Springer Science and Business Media Deutschland GmbH, p. 153-162 10 p. (Medical Image Learning with Limited and Noisy Data, Vol. 13559).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  3. Published

    TempEL: Linking Dynamically Evolving and Newly Emerging Entities

    Zaporojets, K., Kaffee, L. F., Deleu, J., Demeester, T., Develder, C. & Augenstein, Isabelle, 2022, Advances in Neural Information Processing Systems 35 (NeurIPS 2022). NeurIPS Proceedings, 17 p. (Advances in Neural Information Processing Systems, Vol. 35).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  4. 2021
  5. Published

    Classifying convex bodies by their contact and intersection graphs

    Aamand, Anders, Abrahamsen, Mikkel, Houen, Jakob Bæk Tejs & Rasmussen, Peter Michael Reichstein, 2021, 37th International Symposium on Computational Geometry, SoCG 2021. Buchin, K. & de Verdiere, E. C. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 16 p. 3. (Leibniz International Proceedings in Informatics, LIPIcs, Vol. 189).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  6. Published

    On the convergence of the Metropolis algorithm with fixed-order updates for multivariate binary probability distributions.

    Brügge, K., Fischer, A. & Igel, Christian, 2021, Proceedings of The 24th International Conference on Artificial Intelligence and Statistic. PMLR, p. 469-477 (Proceedings of Machine Learning Research, Vol. 130).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  7. Published

    Maximal unbordered factors of random strings

    Cording, P. H., Gagie, T., Knudsen, M. B. T. & Kociumaka, T., 2021, In: Theoretical Computer Science. 852, p. 78-83 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Near-Optimal Distance Oracles for Vertex-Labeled Planar Graphs

    Evald, J., Fredslund-Hansen, V. & Wulff-Nilsen, Christian, 2021, 32nd International Symposium on Algorithms and Computation, ISAAC 2021. Ahn, H-K. & Sadakane, K. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 14 p. 23. (Leibniz International Proceedings in Informatics, LIPIcs, Vol. 212).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  9. Published

    Computational Grammatical Error Correction: Bridging the Gap from Academia to Industry

    Flachs, S. H., 2021, Department of Computer Science, Faculty of Science, University of Copenhagen. 111 p.

    Research output: Book/Report › Ph.D. thesis › Research

  10. Published

    Predicting Protein Content in Grain Using Hyperspectral Deep Learning

    Engstrøm, Ole-Christian Galbo, Dreier, E. S. & Steenstrup Pedersen, Kim, 2021, Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) . IEEE, p. 1372-1380

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  11. Published

    ReGraDa: Reactive Graph Data

    Galrinho, L., Seco, J. C., Debois, S., Hildebrandt, Thomas Troels, Norman, H. & Slaats, Tijs, 2021, Coordination Models and Languages - 23rd IFIP WG 6.1 International Conference, COORDINATION 2021, Held as Part of the 16th International Federated Conference on Distributed Computing Techniques, DisCoTec 2021, Proceedings. Damiani, F. & Dardha, O. (eds.). Springer, p. 188-205 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 12717 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  12. Published

    Towards Human-Centered Natural Language Processing

    Gonzalez, Ana Valeria, 2021, Department of Computer Science, Faculty of Science, University of Copenhagen. 219 p.

    Research output: Book/Report › Ph.D. thesis › Research

  13. Published

    I3T: Intensity Interferometry Imaging Telescope

    Gori, P. M., Vakili, F., Rivet, J. P., Guerin, W., Hugbart, M., Chiavassa, A., Vakili, Adrien, Kaiser, R. & Labeyrie, G., 2021, In: Monthly Notices of the Royal Astronomical Society. 505, 2, p. 2328-2335

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Cross-Domain Label-Adaptive Stance Detection

    Hardalov, M., Arora, Arnav, Nakov, P. & Augenstein, Isabelle, 2021, Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing. Association for Computational Linguistics, p. 9011-9028

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  15. Published

    Interactive Visual Facets to Support Fluid Exploratory Search

    He, C., Micallef, L., Serim, B., Vuong, T., Ruotsalo, Tuukka & Jacucci, G., 2021, 14th International Symposium on Visual Information Communication and Interaction, VINCI 2021. Association for Computing Machinery, p. 1-10 3481565. (ACM International Conference Proceeding Series).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  16. Published

    Pretreatment qEEG biomarkers for predicting pharmacological treatment outcome in major depressive disorder: Independent validation from the NeuroPharm study

    Ip, C. T., Olbrich, S., Ganz, Melanie, Ozenne, Brice Maxime Hugues, Köhler-Forsberg, K., Dam, V. H., Beniczky, S., Jørgensen, Martin Balslev, Frøkjær, Vibe Gedsø, Søgaard, B., Christensen, S. R. & Knudsen, Gitte Moos, Aug 2021, In: European Neuropsychopharmacology. 49, p. 101-112 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Developing and validating COVID-19 adverse outcome risk prediction models from a bi-national European cohort of 5594 patients

    Jimenez-Solem, E., Petersen, T. S., Hansen, C., Hansen, C., Lioma, C., Igel, C., Boomsma, W., Krause, O., Lorenzen, S., Selvan, R., Petersen, J., Nyeland, M. E., Ankarfeldt, M. Z., Virenfeldt, G. M., Winther-Jensen, M., Linneberg, A., Ghazi, M. M., Detlefsen, N., Lauritzen, A. D., Smith, A. G. & 15 others, de Bruijne, Marleen, Ibragimov, Bulat, Petersen, Jens, Lillholm, Martin, Middleton, Jon Anthony, Mogensen, S. H., Thorsen-Meyer, H., Perner, Anders, Helleberg, M., Kaas-Hansen, Benjamin Skov, Bonde, M., Bonde, A., Pai, A., Nielsen, Mads & Sillesen, Martin Hylleholt, 2021, In: Scientific Reports. 11, 1, 12 p., 3246.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Cellular 3D-reconstruction and analysis in the human cerebral cortex using automatic serial sections

    Larsen, N. Y., Li, X., Tan, X., Ji, G., Lin, J., Rajkowska, G., Møller, J., Vihrs, N., Sporring, Jon, Sun, F. & Nyengaard, J. R., Dec 2021, In: Communications Biology . 4, 1, 15 p., 1030.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Neuro-SPECT:On the development and function of brain emission tomography in the Copenhagen area

    Lassen, Anders, Stokely, E., Vorstrup, S., Goldman, T. & Henriksen, J. H., 2021, In: Clinical Physiology and Functional Imaging. 41, 1, p. 10-24 15 p.

    Research output: Contribution to journal › Review › Research › peer-review

  20. Published

    Artificial intelligence surpasses gastrointestinal experts in the classification of endoscopic severity among Ulcerative Colitis

    The Presager Project, T. P. P., 2021, In: Journal of Crohn's & colitis. 15, Suppl. 1, p. S007-S007

    Research output: Contribution to journal › Conference abstract in journal › Research

  21. Published

    Support of closed walks and second eigenvalue multiplicity of graphs

    McKenzie, T., Rasmussen, Peter Michael Reichstein & Srivastava, N., 2021, STOC 2021 - Proceedings of the 53rd Annual ACM SIGACT Symposium on Theory of Computing. Khuller, S. & Williams, V. V. (eds.). Association for Computing Machinery, Inc., p. 396-407

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  22. Published

    Robust parametric modeling of Alzheimer's disease progression

    Mehdipour Ghazi, Mostafa, Nielsen, Mads, Pai, A., Modat, M., Jorge Cardoso, M., Ourselin, S. & Sørensen, L., 2021, In: NeuroImage. 225, 12 p., 117460.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    An inversion tool for conditional term rewriting systems - a case study of Ackermann inversion

    Mikkelsen, M. B., Glück, Robert & Kirkeby, M. H., 2021, Proceedings of the 9th International Workshop on Verification and Program Transformation. Lisitsa, A. & Nemytykh, A. P. (eds.). arxiv.org, p. 33-41 9 p. (Electronic Proceedings in Theoretical Computer Science, EPTCS, Vol. 341).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research

  24. Published

    Dataset Sensitive Autotuning of Multi-versioned Code Based on Monotonic Properties: Autotuning in Futhark

    Munksgaard, P., Breddam, S. L., Henriksen, Troels, Gieseke, Fabian Cristian & Oancea, Cosmin Eugen, 2021, Trends in Functional Programming - 22nd International Symposium, TFP 2021, Revised Selected Papers. Zsok, V. & Hughes, J. (eds.). Springer Science and Business Media Deutschland GmbH, p. 3-23 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 12834 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  25. Published

    Zoom and Enhance: Action Refinement via Subprocesses in Timed Declarative Processes

    Normann, H., Debois, S., Slaats, Tijs & Hildebrandt, Thomas Troels, 2021, Business Process Management - 19th International Conference, BPM 2021, Proceedings. Polyvyanyy, A., Wynn, M. T., Van Looy, A. & Reichert, M. (eds.). Springer, p. 161-178 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 12875 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  26. Published

    Data Management in Microservices: State of the Practice, Challenges, and Research Directions

    Nunes Laigner, Rodrigo, Zhou, Yongluan, Vaz Salles, M. A., Liu, Yijian & Kalinowski, M., 2021, In: Proceedings of the VLDB Endowment. 14, 13, p. 3348–3361

    Research output: Contribution to journal › Conference article › Research › peer-review

  27. Published

    Multi-Hop Fact Checking of Political Claims

    Ostrowski, W., Arora, Arnav, Atanasova, Pepa Kostadinova & Augenstein, Isabelle, 2021, Proceedings of the Thirtieth International Joint Conference on Artificial Intelligence. International Joint Conferences on Artificial Intelligence, Vol. CoRR 2020. p. 3892-3898 (arXiv.org).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  28. Published

    Accelerated Financial Algorithms: Derivative Pricing and Risk Management Applications

    Pawlak, W. M., 2021, Department of Computer Science, Faculty of Science, University of Copenhagen. 184 p.

    Research output: Book/Report › Ph.D. thesis › Research

  29. Published

    Association of Socioeconomic Status With Dementia Diagnosis Among Older Adults in Denmark

    Petersen, Jindong Ding, Wehberg, S., Packness, A., Svensson, N. H., Hyldig, N., Raunsgaard, S., Andersen, M. K., Ryg, J., Mercer, S. W., Søndergaard, J. & Waldorff, Frans Boch, 2021, In: JAMA network open. 4, 5, 13 p., 2110432.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    An algorithm for stochastic and adversarial bandits with switching costs

    Rouyer, C., Seldin, Yevgeny & Cesa-Bianchi, N., 2021, Proceedings of the 38th International Conference on Machine Learning (ICML). PMLR, p. 9127-9135 (Proceedings of Machine Learning Research, Vol. 139).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  31. 2020
  32. Published

    Fast hashing with strong concentration bounds

    Aamand, Anders, Houen, Jakob Bæk Tejs, Knudsen, M. B. T., Rasmussen, Peter Michael Reichstein & Thorup, Mikkel, 2020, STOC 2020 - Proceedings of the 52nd Annual ACM SIGACT Symposium on Theory of Computing. Makarychev, K., Makarychev, Y., Tulsiani, M., Kamath, G. & Chuzhoy, J. (eds.). Association for Computing Machinery, p. 1265-1278 (Proceedings of the Annual ACM Symposium on Theory of Computing).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  33. Published

    Minimum perimeter-sum partitions in the plane

    Abrahamsen, Mikkel, de Berg, M., Buchin, K., Mehr, M. & Mehrabi, A. D., 2020, In: Discrete & Computational Geometry. 63, p. 483–505

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Near-optimal induced universal graphs for cycles and paths

    Abrahamsen, Mikkel, Alstrup, Stephen, Holm, Jacob, Knudsen, M. B. T. & Stöckel, M., 2020, In: Discrete Applied Mathematics. 282, p. 1-13 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Constraining the Chiral Magnetic Effect with charge-dependent azimuthal correlations in Pb-Pb collisions at root s(NN)=2.76 and 5.02 TeV

    Acharya, S., Torals-Acosta, F., Adam, J., Adamova, D., Adler, A., Adolfsson, J., Aggarwal, MM., Rinella, G. A., Agnello, M., Agrawal, N., Ahn, S. U., Aiola, S., Akindinov, A., Al-Turany, M., Alam, SN., Bearden, I., Bourjau, C. A., rtc312, R., bsm989, B., Gaardhøje, J. J. & 8 others, Ozelin De Lima Pimentel, L., Pacik, V., Nielsen, Børge Svane, Thoresen, F., Vislavicius, V., Schukraft, J., Zhou, You & Alice Collaboration, A. C., 24 Sep 2020, In: Journal of High Energy Physics (Online). 2020, 9, 34 p., 160.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Oblivious sketching of high-degree polynomial kernels

    Ahle, T. D., Kapralov, M., Houen, Jakob Bæk Tejs, Pagh, R., Velingker, A., Woodruff, D. P. & Zandieh, A., 2020, 31st Annual ACM-SIAM Symposium on Discrete Algorithms, SODA 2020. Chawla, S. (ed.). Association for Computing Machinery, p. 141-160 20 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  37. Published

    Carbontracker: Tracking and Predicting the Carbon Footprint of Training Deep Learning Models

    Anthony, L. F. W., Kanding, B. & Selvan, Raghav, 2020. 11 p.

    Research output: Contribution to conference › Paper › Research › peer-review

  38. Published

    Imperative versus Declarative Process Mining: An Empirical Comparison

    Back, C.O., Debois, S. & Slaats, Tijs, 2020, Department of Computer Science, University of Copenhagen, 14 p.

    Research output: Working paper › Research

  39. Published

    The structure of the serotonin system: A PET imaging study

    Beliveau, V., Ozenne, Brice Maxime Hugues, Strother, S., Greve, D. N., Svarer, C., Knudsen, Gitte Moos & Ganz, Melanie, 2020, In: NeuroImage. 205, 116240.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Back to the Future: Sequential Alignment of Text Representations

    Bjerva, J., Kouw, W. M. & Augenstein, Isabelle, 2020, Proceedings of the 34th AAAI Conference on Artificial Intelligence. AAAI Press, 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  41. Published

    SIGTYP 2020 Shared Task: Prediction of Typological Features

    Bjerva, J., Salesky, E., Mielke, S. J., Chaudhary, A., Giuseppe, C., Ponti, E. M., Vylomova, E., Cotterell, R. & Augenstein, Isabelle, 2020, Proceedings of the Second Workshop on Computational Research in Linguistic Typology. Association for Computational Linguistics, p. 1-11

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  42. Published

    A Complete Characterization of Infinitely Repeated Two-Player Games having Computable Strategies with no Computable Best Response under Limit-of-Means Payoff

    Dargaj, J. & Simonsen, Jakob Grue, 2020, EC 2020 - Proceedings of the 21st ACM Conference on Economics and Computation. Association for Computing Machinery, p. 69-70 2 p. 3399520

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  43. Published

    Effects of Sleep Deprivation on Blood Glucose, Food Cravings, and Affect in a Non-Diabetic: An N-of-1 Randomized Pilot Study

    Daza, E. J., Wac, Katarzyna & Oppezzo, M., 2020, In: Healthcare. 8, 1, 17 p., 6.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    On the Effects of Integrating Region-Based Memory Management and Generational Garbage Collection in ML

    Elsman, Martin & Hallenberg, N., 2020, Practical Aspects of Declarative Languages - 22nd International Symposium, PADL 2020, Proceedings. Komendantskaya, E. & Liu, Y. A. (eds.). Springer VS, p. 95-112 18 p. (Lecture Notes in Computer Science, Vol. 12007 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  45. Published

    Digital Game Interventions for Youth Mental Health Services (Gaming My Way to Recovery): Protocol for a Scoping Review

    Ferrari, M., McIlwaine, S., Reynolds, J. A., Archie, S., Boydell, K., Lal, S., Shah, J. L., Henderson, J., Alvarez-Jimenez, M., Andersson, N., Boruff, J., Nielsen, R. K. L. & Iyer, S. N., Jun 2020, In: JMIR Research Protocols. 9, 6, 10 p., 13834.

    Research output: Contribution to journal › Review › Research › peer-review

  46. Published

    Algoritmer kopierer lægers fordomme om race og køn

    Ganz, Melanie, Holm, Sune Hannibal & Feragen, A., 4 Jun 2020, In: Dagbladet Politiken. p. 9 (sektion 2) 1 p.

    Research output: Contribution to journal › Contribution to newspaper - Comment/debate › Communication

  47. Published

    Position paper on COVID-19 imaging and AI: From the clinical needs and technological challenges to initial AI solutions at the lab and national level towards a new era for AI in healthcare

    Greenspan, H., Estepar, R. S. J., Niessen, W. J., Siegel, E. & Nielsen, Mads, 2020, In: Medical Image Analysis. 66, 11 p., 101800.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A Formally Verified Static Analysis Framework for Compositional Contracts

    Henglein, Fritz, Larsen, C. K. & Murawska, A., 2020. 18 p.

    Research output: Contribution to conference › Paper › Research › peer-review

  49. Published

    Compiling generalized histograms for GPU

    Henriksen, Troels, Hellfritzsch, S., Sadayappan, P. & Oancea, Cosmin Eugen, 2020, Proceedings of SC 2020: International Conference for High Performance Computing, Networking, Storage and Analysis. IEEE, 9355244

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  50. Published

    Køpsala: Transition-Based Graph Parsing via Efficient Training and Effective Encoding

    Hershcovich, Daniel, De Lhoneux, M., Kulmizev, A., Pejhan, E. & Nivre, J., 2020, Proceedings of the 16th International Conference on Parsing Technologies and the IWPT 2020 Shared Task on Parsing into Enhanced Universal Dependencies. Association for Computational Linguistics, p. 236-244

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  51. Published

    Railway Asset Detection and Geolocation

    Karagiannis, G., 2020, Department of Computer Science, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  52. Published

    Context Matters in Disorder Based Protein Communication

    Kragelund, Birthe Brandt, Prestel, Andreas, Wickmann, N., Martins, J., Boomsma, Wouter, Staby, L., Hendus-Altenburger, R. & Skriver, Karen, 2020, In: Biophysical Journal. 118, 3, suppl. 1, p. 491A 2407-Plat.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  53. Published

    Predicting Treatment Outcome in Major Depressive Disorder Using Serotonin 4 Receptor PET Brain Imaging, Functional MRI, Cognitive-, EEG-Based, and Peripheral Biomarkers: A NeuroPharm Open Label Clinical Trial Protocol

    Köhler-Forsberg, K., Jørgensen, Anders, Dam, V. H., Stenbæk, Dea Siggaard, Fisher, P. M., Ip, C. T., Ganz, Melanie, Poulsen, Henrik Enghusen, Giraldi, Annamaria Giovanna Elena, Ozenne, Brice Maxime Hugues, Jørgensen, Martin Balslev, Knudsen, Gitte Moos & Frøkjær, Vibe Gedsø, 2020, In: Frontiers in Psychiatry. 11, 15 p., 641.

    Research output: Contribution to journal › Journal article › Research › peer-review

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