Anders Krogh

Anders Krogh

Professor

ORCID: 0000-0002-5147-6282

Publication year:
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1 - 50 out of 106Page size: 50
  1. 2001
  2. Published

    On the total number of genes and their length distribution in complete microbial genomes

    Skovgaard, M., Jensen, Lars Juhl, Brunak, Søren, Ussery, D. & Krogh, Anders, 2001, In: Trends in Genetics. 17, 8, p. 425-8 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. 2002

  4. A sequence-profile-based HMM for predicting and discriminating β barrel membrane proteins

    Martelli, P. L., Fariselli, P., Krogh, Anders & Casadio, R., 2002, In: Bioinformatics. 18, Suppl. 1, p. S46-S53

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. 2003
  6. Published

    EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance

    Larsen, T. S. & Krogh, Anders, 2003, In: BMC Bioinformatics. 4(1), p. 21

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Prediction of lipoprotein signal peptides in Gram-negative bacteria.

    Juncker, A. S., Willenbrock, H., Heijne, G. V., Nielsen, H. & Krogh, Anders, 2003, In: Protein Science. 12(8), p. 1652-1662

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Reliability measures for membrane protein topology prediction algorithms

    Melén, K., Krogh, Anders & Heijne, G. V., 2003, In: Journal of Molecular Biology. 327(3), p. 735-744

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    RpoD promoters in Campylobacter jejuni exhibit a strong periodic signal instead of a -35 box

    Petersen, L., Larsen, T. S., Ussery, D. W., On, S. L. W. & Krogh, Anders, 2003, In: Journal of Molecular Biology. 326(5), p. 1361-1372

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. 2004
  11. Published

    A Combined Transmembrane Topology and Signal Peptide Prediction Method

    Kall, L., Krogh, Anders & Sonnhammer, E. L., 2004, In: Journal of Molecular Biology. Vol. 338 (5), p. 1027-36

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Teaching computers to fold proteins

    Winther, O. & Krogh, Anders, 2004, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). Vol. 70 (3) pt. 1, p. 030903

    Research output: Contribution to journal › Journal article › Research

  13. Published

    The Block Hidden Markov Model for Biological Sequence Analysis

    Won, K. J., Prügel-Bennett, A. & Krogh, Anders, 2004, Knowledge-BasedIntelligent Informationand Engineering Systems: 8th International Conference, KES 2004, Proceedings. Negoita, M. G., Howlett, R. J. & Jain, L. (eds.). Springer, Vol. 1. p. 64-70 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 3213).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  14. Published

    Training HMM structure with genetic algorithm for biological sequence analysis

    Won, K. J. & Krogh, Anders, 2004, In: Bioinformatics. Vol. 20 (18), p. 3613-9

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. 2005
  16. Published

    An HMM posterior decoder for sequence feature prediction that includes homology information

    Käll, L., Krogh, Anders & Sonnhammer, E. L. L., 2005, In: Bioinformatics. 21, 1, p. i251 - i257

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Computational evidence for hundreds of non-conserved plant microRNAs

    Lindow, M. & Krogh, Anders, 2005, In: BMC Genomics. 6, p. 119

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Evolving hidden Markov models for protein secondary structure prediction

    Won, K. J., Hamelryck, Thomas Wim, Prügel-Bennett, A. & Krogh, Anders, 2005, The 2005 IEEE Congress on Evolutionary Computation, IEEE CEC 2005: Proceedings. IEEE, Vol. 3. p. 33-40 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  19. Published

    Large-scale prokaryotic gene prediction and comparison to genome annotation

    Nielsen, P. & Krogh, Anders, 2005, In: Bioinformatics. 21, 24, p. 4322-9

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. 2006
  21. Published

    A hidden Markov model approach for determining expression from genomic tiling micro arrays

    Terkelsen, K. M., Gardner, P. P., Arctander, P. & Krogh, Anders, 2006, In: BMC Bioinformatics. 7, 239

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Automatic generation of gene finders for eukaryotic species

    Terkelsen, K. M. & Krogh, Anders, 2006, In: BMC Bioinformatics. 7, 263

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Evolving the structure of hidden Markov Models

    won, K. J., Prugel-Bennett, A. & Krogh, Anders, 2006, In: IEEE Transactions on Evolutionary Computation. 10, 1, p. 39-49

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Measuring covariation in RNA alignments: Physical realism improves information measures

    Lindgreen, S., Gardner, P. P. & Krogh, Anders, 2006, In: Bioinformatics. 22, 24, p. 2988-2995 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Novel overlapping coding sequences in Chlamydia trachomatis

    Jensen, K. T., Petersen, L., Falk, S., Iversen, P., Andersen, P., Theisen, Michael & Krogh, Anders, 2006, In: FEMS Microbiology Reviews. 265, 1, p. 106-17

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    PONGO: a web server for multiple predictions of all-alpha transmembrane proteins

    Amico, M., Finelli, M., Rossi, I., Zauli, A., Elofsson, A., Viklund, H., Heijne, G. V., Joes, D., Krogh, Anders, Fariselli, P., Luigi, M. P. & Casadio, R., 2006, In: Nucleic Acids Research. 34, p. W169-72

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Sampling Realistic Protein Conformations Using Local Structural Bias

    Hamelryck, Thomas Wim, Kent, J. T. & Krogh, Anders, 2006, In: PLoS ONE. 2, 9, p. e131

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. 2007
  29. Published

    A code for transcription initiation in mammalian genomes

    Frith, M. C., Valen, E. D., Krogh, Anders, Hayashizaki, Y., Carninci, P. & Sandelin, Albin Gustav, 2007, In: Genome Research. 18, 1, p. 1-12 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server.

    Käll, L., Krogh, Anders & Sonnhammer, E. L. L., 2007, In: Nucleic Acids Research. 35, Web Server issue, p. W429-32

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    An evolutionary method for learning HMM structure: prediction of protein secondary structure.

    Won, K., Hamelryck, Thomas Wim, Prügel-Bennett, A. & Krogh, Anders, 2007, In: BMC Bioinformatics. 8, p. 357

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants.

    Lindow, M., Jacobsen, A., Nygaard, S., Mang, Y. & Krogh, Anders, 2007, In: PLoS Computational Biology. 3, 11, p. e238

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.

    Lindgreen, S., Gardner, P. P. & Krogh, Anders, 2007, In: Bioinformatics. 23, 24, p. 3304-11 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Molecular composition of IMP1 ribonucleoprotein granules.

    Jønson, L., Vikesaa, J., Krogh, Anders, Nielsen, Lars Kamp, Hansen, T. V., Borup, R., Johnsen, A. H., Christiansen, Jan & Nielsen, Finn Cilius, 2007, In: Molecular and Cellular Proteomics. 6, 5, p. 798-811 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Multiple alignment and structure prediction of non-coding RNA sequences

    Lindgreen, S., Gardner, P. P. & Krogh, Anders, 2007, In: BMC Bioinformatics. 8, Suppl. 8, 1 p., P8.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  36. Published

    Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models

    Fariselli, P., Molinini, D., Casadio, R. & Krogh, Anders, 2007, Bioinformatics Research and Development: First International Conference, BIRD 2007 Proceedings. Hochreiter, S. & Wagner, R. (eds.). Springer, p. 292-302 11 p. (Lecture Notes in Bioinformatics, Vol. 4414).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  37. 2008
  38. Published

    A generative, probabilistic model of local protein structure

    Boomsma, Wouter, Mardia, K. V., Taylor, C. C., Ferkinghoff-Borg, J., Krogh, Anders & Hamelryck, Thomas Wim, 2008, In: Proceedings of the National Academy of Science of the United States of America. 105, 26, p. 8932-8937 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Asap: a framework for over-representation statistics for transcription factor binding sites.

    Marstrand, T. T., Frellsen, J., Moltke, Ida, Thiim, M., Valen, E., Retelska, D. & Krogh, Anders, 2008, In: PLoS ONE. 3, 2, p. e1623

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    BayesMD: Flexible Biological Modeling for Motif Discovery

    Tang, M. E., Krogh, Anders & Winther, Ole, 2008, In: Journal of Computational Biology. 15, 10, p. 1347-63 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Hidden Markov models for prediction of protein features.

    Bystroff, C. & Krogh, Anders, 2008, In: Methods in Molecular Biology. 413, p. 173-98 25 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.

    Bryne, J. C., Valen, E., Tang, M. E., Marstrand, T., Winther, Ole, da Piedade, I., Krogh, Anders, Lenhard, B. & Sandelin, Albin Gustav, 2008, In: Nucleic Acids Research. 36, Database issue, p. D102-6

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Modeling promoter grammars with evolving hidden Markov models

    Won, K., Sandelin, Albin Gustav, Marstrand, T. T. & Krogh, Anders, 2008, In: Bioinformatics. 24, 15, p. 1669-75 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    What are artificial neural networks?

    Krogh, Anders, 2008, In: Nature Biotechnology. 26, 2, p. 195-7 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    57miRNA regulation during oncogene-induced senescence


    Christoffersen, N. R., Frankel, Lisa, Klausen, M., Jacobsen, A., Krogh, Anders & Lund, Anders H., May 2008.

    Research output: Contribution to conference › Conference abstract for conference › Research

  46. 2009
  47. Published

    CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information

    Bartoli, L., Fariselli, P., Krogh, Anders & Casadio, R., 2009, In: Bioinformatics. 25, 21, p. 2757-63 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Discovery of regulatory elements is improved by a discriminatory approach

    Valen, E., Sandelin, Albin Gustav, Winther, Ole & Krogh, Anders, 2009, In: PLoS Computational Biology. 5, 11, p. e1000562

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE

    Valen, E., Pascarella, G., Chalk, A., Maeda, N., Kojima, M., Kawazu, C., Murata, M., Nishiyori, H., Lazarevic, D., Motti, D., Marstrand, T. T., Tang, M-H. E., Zhao, X., Krogh, A., Winther, O., Arakawa, T., Kawai, J., Wells, C., Daub, C., Harbers, M. & 4 others, Hayashizaki, Y., Gustincich, S., Sandelin, Albin Gustav & Carninci, P., 2009, In: Genome Research. 19, 2, p. 255-65 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing

    Nygaard, S., Jacobsen, A., Lindow, M., Eriksen, J., Balslev, E., Flyger, H., Tolstrup, N., Moller, S., Krogh, Anders & Litman, T., 2009, In: B M C Medical Genomics. 2, 1, p. 35

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

    Suzuki, H., Forrest, A. R. R., van Nimwegen, E., Daub, C. O., Balwierz, P. J., Irvine, K. M., Lassmann, T., Ravasi, T., Hasegawa, Y., de Hoon, M. J. L., Katayama, S., Schroder, K., Carninci, P., Tomaru, Y., Kanamori-Katayama, M., Kubosaki, A., Akalin, A., Ando, Y., Arner, E., Asada, M. & 31 others, Asahara, H., Bailey, T., Bajic, V. B., Bauer, D., Beckhouse, A. G., Bertin, N., Björkegren, J., Brombacher, F., Bulger, E., Chalk, A. M., Chiba, J., Cloonan, N., Dawe, A., Dostie, J., Engström, P. G., Essack, M., Faulkner, G. J., Fink, J. L., Fredman, D., Fujimori, K., Furuno, M., Gojobori, T., Gough, J., Grimmond, S. M., Jacobsen, A., Krogh, Anders, Nygaard, S., Sandelin, Albin Gustav, Valen, E., Winther, Ole & Riken Omics Science Center, R. O. S. C., 2009, In: Nature Genetics. 41, 5, p. 553-62 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. 2010
  53. Published

    MicroRNA-145 targets YES and STAT1 in colon cancer cells

    Gregersen, Lea Haarup, Jacobsen, A. B., Frankel, Lisa, Wen, J., Krogh, Anders & Lund, Anders H., 2010, In: PLoS ONE. 5, 1, p. e8836

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    miRMaid: a unified programming interface for microRNA data resources

    Jacobsen, A., Krogh, Anders, Kauppinen, S. & Lindow, M., 2010, In: BMC Bioinformatics. 11, Suppl 1, p. 29

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Ancient human genome sequence of an extinct Palaeo-Eskimo

    Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., Bertalan, M., Nielsen, K., Gilbert, T., Wang, Y., Raghavan, M., Campos, P., Kamp, H. L. M., Wilson, A. S., Gledhill, A., Tridico, S. & 32 others, Bunce, M., Lorenzen, Eline, Binladen, J. K. M. A., Guo, X., Zhao, J., Zhang, X., Zhang, H., Li, Z., Chen, M., Orlando, L. A. A., Kristiansen, Karsten, Bak, M., Tommerup, Niels, Bendixen, C., Pierre, T. L., Grønnow, B., Meldgaard, Morten, Andreasen, C., Fedorova, S. A., Osipova, L. P., Higham, T. F. G., Ramsey, C. B., Hansen, Thomas van Overeem, Nielsen, Finn Cilius, Crawford, M. H., Brunak, Søren, Sicheritz-Pontén, T., Villems, R., Nielsen, Rasmus, Krogh, Anders, Wang, J. & Willerslev, Eske, 11 Feb 2010, In: Nature. 463, 7282, p. 757-762 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Signatures of RNA binding proteins globally coupled to effective microRNA target sites

    Jacobsen, A., Wen, J., Marks, D. S. & Krogh, Anders, 1 Aug 2010, In: Genome Research. 20, 8, p. 1010-9 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Long- and short-term selective forces on malaria parasite genomes

    Nygaard, S., Braunstein, A., Malsen, G., Van Dongen, S., Gardner, P. P., Krogh, Anders, Otto, T. D., Pain, A., Berriman, M., McAuliffe, J., Dermitzakis, E. T. & Jeffares, D. C., 1 Sep 2010, In: P L o S Genetics. 6, 9

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. 2011
  59. Published

    An Aboriginal Australian genome reveals separate human dispersals into Asia

    Rasmussen, M., Guo, X., Wang, Y., Lohmueller, K. E., Rasmussen, S., Albrechtsen, A., Skotte, L., Lindgreen, S., Metspalu, M., Jombart, T., Kivisild, T., Zhai, W., Eriksson, A., Manica, A., Orlando, L., De La Vega, F. M., Tridico, S., Metspalu, E., Nielsen, K., Avila Arcos, M. D. C. & 38 others, Moreno Mayar, J. Víctor, Muller, C., Dortch, J., Gilbert, M Thomas P, Lund, O., Wesolowska, A., Karmin, M., Weinert, L. A., Wang, B., Li, J., Tai, S., Xiao, F., Hanihara, T., van Driem, G., Jha, A. R., Ricaut, F., de Knijff, P., Migliano, A. B., Gallego Romero, I., Kristiansen, Karsten, Lambert, D. M., Brunak, Søren, Forster, P., Brinkmann, B., Nehlich, O., Bunce, M., Richards, M., Gupta, R., Bustamante, C. D., Krogh, Anders, Foley, R. A., Lahr, M. M., Balloux, F., Sicheritz-Pontén, T., Villems, R., Nielsen, Rasmus, Wang, J. & Willerslev, Eske, 2011, In: Science. 334, 6052, p. 94-98 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action

    Wen, J., Parker, B. J., Jacobsen, A. & Krogh, Anders, 2011, In: R N A. 17, 5, p. 820-34 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming

    Nygaard, S., Zhang, G., Schiøtt, M., Li, C., Wurm, Y., Hu, H., Zhou, J., Ji, L., Qiu, F., Rasmussen, M., Pan, H., Hauser, Frank, Krogh, Anders, Grimmelikhuijzen, Cornelis (Cok), Wang, J. & Boomsma, Jacobus J., 2011, In: Genome Research. 21, 8, p. 1339-1348 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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