Anders Krogh
Professor
Machine Learning
Universitetsparken 1, 2100 København Ø
Center for Health Data Science
Blegdamsvej 3B
2200 København N
- 2023
- Published
N-of-one differential gene expression without control samples using a deep generative model
Prada Luengo, Inigo, Schuster, Viktoria, Liang, Yuhu, Terkelsen, Thilde Bagger, Sora, Valentina & Krogh, Anders, 2023, In: Genome Biology. 24, 1, 17 p., 263.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Synthetic Data Generation by Artificial Intelligence to Accelerate Research and Precision Medicine in Hematology
D'Amico, S., Dall'Olio, D., Sala, C., Dall'Olio, L., Sauta, E., Zampini, M., Asti, G., Lanino, L., Maggioni, G., Campagna, A., Ubezio, M., Russo, A., Bicchieri, M. E., Riva, E., Tentori, C. A., Travaglino, E., Morandini, P., Savevski, V., Santoro, A., Prada-Luengo, I. & 9 others, , 2023, In: JCO clinical cancer informatics. 7, p. 1-22 e2300021.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Deep Generative Decoder: MAP estimation of representations improves modelling of single-cell RNA data
Schuster, Viktoria & Krogh, Anders, 2023, In: Bioinformatics. 39, 9, 14 p., btad497.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
Context dependency of nucleotide probabilities and variants in human DNA
Liang, Yuhu, Grønbæk, Christian, Fariselli, P. & Krogh, Anders, 2022, In: BMC Genomics. 23, 1, 15 p., 87.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Context dependent prediction in DNA sequence using neural networks
Grønbæk, Christian, Liang, Yuhu, Elliott, Desmond & Krogh, Anders, 2022, In: PeerJ. 10, 22 p., e13666.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
A manifold learning perspective on representation learning: Learning decoder and representations without an encoder
Schuster, Viktoria & Krogh, Anders, Nov 2021, In: Entropy. 23, 11, 14 p., 1403.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High-throughput proteomics of breast cancer interstitial fluid: identification of tumor subtype-specific serologically relevant biomarkers
Terkelsen, T., Pernemalm, M., Gromov, P., Borresen-Dale, A., Krogh, Anders, Haakensen, V. D., Lethio, J., Papaleo, E. & Gromova, I., 2021, In: Molecular Oncology. 15, 2, p. 429-461 33 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
CAncer bioMarker Prediction Pipeline (CAMPP) - A standardized framework for the analysis of quantitative biological data
Terkelsen, T., Krogh, Anders & Papaleo, E., 2020, In: PLOS Computational Biology. 16, 3, 20 p., e1007665.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Secreted breast tumor interstitial fluid microRNAs and their target genes are associated with triple-negative breast cancer, tumor grade, and immune infiltration
Terkelsen, T., Russo, F., Gromov, P., Haakensen, V. D., Brunak, Søren, Gromova, I., Krogh, Anders & Papaleo, E., 2020, In: Breast Cancer Research. 22, 1, 36 p., 73.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Taxonomic classification method for metagenomics based on core protein families with Core-Kaiju
Tovo, A., Menzel, P., Krogh, Anders, Cosentino Lagomarsino, M. & Suweis, S., 2020, In: Nucleic Acids Research. 48, 16, 13 p., e93.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads
Prada Luengo, Inigo, Krogh, Anders, Sørensen, L. M. & Regenberg, Birgitte, 2019, In: BMC Bioinformatics. 20, 9 p., 663.Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Accurate genotyping across variant classes and lengths using variant graphs
Sibbesen, Jonas Andreas, Maretty, L., Krogh, Anders, Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Have, C. T., Bork-Jensen, J., Guo, X., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Wang, J. & Brunak, Søren, 2018, In: Nature Genetics. 50, p. 1054-1059 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios
Matey-Hernandez, M. L., Danish Pan Genome Consortium, D. P. G. C., Brunak, Søren, Izarzugaza, J. M. G., Sørensen, L. M., Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Sun, J., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Wang, J., Eiberg, Hans Rudolf Lytchoff & Kristiansen, Karsten, 2018, In: BMC Bioinformatics. 19, p. 1-12 239.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History
Liu, S., Huang, S., Chen, F., Zhao, L., Yuan, Y., Francis, S. S., Fang, L., Li, Z., Lin, L., Liu, R., Zhang, Y., Xu, H., Li, S., Zhou, Y., Davies, R. W., Liu, Q., Walters, R. G., Lin, K., Ju, J., Komeliussen, T. & 18 others, , 2018, In: Cell. 175, 2, p. 347-359, e1-e7Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Sugar metabolism of the first thermophilic Planctomycete Thermogutta terrifontis: comparative genomic and transcriptomic approaches
Elcheninov, A. G., Menzel, P., Gudbergsdottir, S. R., Slesarev, A. I., Kadnikov, V. V., Krogh, Anders, Bonch-Osmolovskaya, E. A., Peng, Xu & Kublanov, I. V., 2 Nov 2017, In: Frontiers in Microbiology. 8, 11 p., 2140.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assembly and analysis of 100 full MHC haplotypes from the Danish population
Jensen, J. M., Villesen, P., Friborg, R. M., Mailund, T., Besenbacher, S., Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R. & 39 others, , Sep 2017, In: Genome Research. 27, 9, p. 1597-1607 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors
Plass, M., Rasmussen, S. H. & Krogh, Anders, 14 Apr 2017, In: PLoS Computational Biology. 13, 4, 26 p., e1005460.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion
Skov, L., Schierup, M. H., Danish Pan Genome Consortium, D. P. G. C., Sørensen, L. M., Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Rasmussen, Simon, Kristiansen, Karsten & Brunak, Søren, 2017, In: PLOS Genetics. 13, 8, p. e1006834Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sequencing and de novo assembly of 150 genomes from Denmark as a population reference
Sørensen, L. M., Jensen, J. M., Petersen, B., Sibbesen, J. A., Liu, S., Villesen, P., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R., Ye, W., Rao, J., Guo, X. & 39 others, , 2017, In: Nature. 548, 7665, p. 87-91 5 p.Research output: Contribution to journal › Letter › Research › peer-review
- 2016
- Published
Fast and sensitive taxonomic classification for metagenomics with Kaiju
Menzel, P., Ng, K. L. & Krogh, Anders, 2016, In: Nature Communications. 7, 9 p., 11257.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs
Islin, S. R., Menzel, P., Krogh, Anders, Young, M. & Peng, Xu, 2016, In: Environmental Microbiology. 18, 3, p. 863-874 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RNA sequencing of trigeminal ganglia in Rattus Norvegicus after glyceryl trinitrate infusion with relevance to migraine
Pedersen, S. H., Sørensen, L. M., Ramachandran, R., Sibbesen, Jonas Andreas, Yakimov, V., Christensen, R. E., Hansen, Thomas Folkmann, Krogh, Anders, Olesen, Jes & Olesen, I. J., 2016, In: P L o S One. 11, 5, 13 p., e0155039.Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
- Published
De novo assembly of a haplotype-resolved human genome
Cao, H., Wu, H., Luo, R., Huang, S., Sun, Y., Tong, X., Xie, Y., Liu, B., Yang, H., Zheng, H., Li, J., Li, B., Wang, Y., Yang, F., Sun, P., Liu, S., Gao, P., Huang, H., Sun, J., Chen, D. & 21 others, , 2015, In: Nature Biotechnology. 33, 6, p. 617-626 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Drosophila Imp iCLIP identifies an RNA assemblage coordinating F-actin formation
Hansen, H. T., Rasmussen, S. H., Adolph, S. K., Plass, M., Krogh, Anders, Sanford, J., Nielsen, Finn Cilius & Christiansen, Jan, 2015, In: Genome Biology (Online Edition). 16, 16 p., 123.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin
Vikeså, J., Møller, A. K. H., Kaczkowski, B., Helweg-Larsen, R. B., Winther, Ole, Henao Giraldo, R., Krogh, Anders, Perell, K., Jensen, F., Daugaard, G. & Nielsen, Finn Cilius, 2015, In: B M C Cancer. 15, 14 p., 151.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 9738
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6185
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Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
3409
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microRNA-146a inhibits G protein-coupled receptor-mediated activation of NF-κB by targeting CARD10 and COPS8 in gastric cancer
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
3325
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Improving ancient DNA read mapping against modern reference genomes
Research output: Contribution to journal › Journal article › Research › peer-review
Published