Anders Krogh

Anders Krogh

Professor

ORCID: 0000-0002-5147-6282

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  1. Published

    BayesMD: Flexible Biological Modeling for Motif Discovery

    Tang, M. E., Krogh, Anders & Winther, Ole, 2008, In: Journal of Computational Biology. 15, 10, p. 1347-63 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Bayesian transcriptome assembly

    Sørensen, L. M., Sibbesen, Jonas Andreas & Krogh, Anders, 2014, In: Genome Biology (Online Edition). 15, 10, 11 p., 501.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios

    Matey-Hernandez, M. L., Danish Pan Genome Consortium, D. P. G. C., Brunak, Søren, Izarzugaza, J. M. G., Sørensen, L. M., Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Sun, J., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Wang, J., Eiberg, Hans Rudolf Lytchoff & Kristiansen, Karsten, 2018, In: BMC Bioinformatics. 19, p. 1-12 239.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    CAncer bioMarker Prediction Pipeline (CAMPP) - A standardized framework for the analysis of quantitative biological data

    Terkelsen, T., Krogh, Anders & Papaleo, E., 2020, In: PLOS Computational Biology. 16, 3, 20 p., e1007665.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information

    Bartoli, L., Fariselli, P., Krogh, Anders & Casadio, R., 2009, In: Bioinformatics. 25, 21, p. 2757-63 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin

    Vikeså, J., Møller, A. K. H., Kaczkowski, B., Helweg-Larsen, R. B., Winther, Ole, Henao Giraldo, R., Krogh, Anders, Perell, K., Jensen, F., Daugaard, G. & Nielsen, Finn Cilius, 2015, In: B M C Cancer. 15, 14 p., 151.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Comparative metagenomics of eight geographically remote terrestrial hot springs

    Menzel, P., Islin, S. R., Rike, A. G., Lin, L., Zhang, Q., Contursi, P., Moracci, M., Kristjansson, J. K., Bolduc, B., Gavrilov, S., Ravin, N., Mardanov, A., Bonch-Osmolovskaya, E., Young, M., Krogh, Anders & Peng, Xu, 2015, In: Microbial Ecology. 70, 2, p. 411-424 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional programs in AML patients

    Rapin, N. P. J., Bagger, F. O., Jendholm, L. J., Mora-Jensen, H., Krogh, Anders, Kohlmann, A., Thiede, C., Borregaard, N., Bullinger, L., Winther, Ole, Theilgaard-Mønch, Kim & Porse, Bo Torben, 6 Feb 2014, In: Blood (online). 123, 6, p. 894-904 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Computational evidence for hundreds of non-conserved plant microRNAs

    Lindow, M. & Krogh, Anders, 2005, In: BMC Genomics. 6, p. 119

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Context dependency of nucleotide probabilities and variants in human DNA

    Liang, Yuhu, Grønbæk, Christian, Fariselli, P. & Krogh, Anders, 2022, In: BMC Genomics. 23, 1, 15 p., 87.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Context dependent prediction in DNA sequence using neural networks

    Grønbæk, Christian, Liang, Yuhu, Elliott, Desmond & Krogh, Anders, 2022, In: PeerJ. 10, 22 p., e13666.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Discovery of regulatory elements is improved by a discriminatory approach

    Valen, E., Sandelin, Albin Gustav, Winther, Ole & Krogh, Anders, 2009, In: PLoS Computational Biology. 5, 11, p. e1000562

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale

    Danish Pan Genome Consortium, D. P. G. C., Belling, K. G. & Rasmussen, Simon, 2015, In: GigaScience. 4, 13 p., 64.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance

    Larsen, T. S. & Krogh, Anders, 2003, In: BMC Bioinformatics. 4(1), p. 21

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Evolving hidden Markov models for protein secondary structure prediction

    Won, K. J., Hamelryck, Thomas Wim, Prügel-Bennett, A. & Krogh, Anders, 2005, The 2005 IEEE Congress on Evolutionary Computation, IEEE CEC 2005: Proceedings. IEEE, Vol. 3. p. 33-40 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  16. Published

    Evolving the structure of hidden Markov Models

    won, K. J., Prugel-Bennett, A. & Krogh, Anders, 2006, In: IEEE Transactions on Evolutionary Computation. 10, 1, p. 39-49

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Fast and sensitive taxonomic classification for metagenomics with Kaiju

    Menzel, P., Ng, K. L. & Krogh, Anders, 2016, In: Nature Communications. 7, 9 p., 11257.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii

    Seim, I., Fang, X., Xiong, Z., Lobanov, A. V., Huang, Z., Ma, S., Feng, Y., Turanov, A. A., Zhu, Y., Lenz, T. L., Gerashchenko, M. V., Fan, D., Yim, S. H., Yao, X., Jordan, D., Xiong, Y., Ma, Y., Lyapunov, A. N., Chen, G., Kulakova, O. I. & 9 others, Sun, Y., Lee, S., Bronson, R. T., Moskalev, A. A., Sunyaev, S. R., Zhang, G., Krogh, Anders, Wang, J. & Gladyshev, V. N., 2013, In: Nature Communications. 4, 8 p., 2212.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax

    Fang, X., Nevo, E., Han, L., Levanon, E. Y., Zhao, J., Avivi, A., Larkin, D., Jiang, X., Feranchuk, S., Zhu, Y., Fishman, A., Feng, Y., Sher, N., Xiong, Z., Hankeln, T., Huang, Z., Gorbunova, V., Zhang, L., Zhao, W., Wildman, D. E. & 33 others, Xiong, Y., Gudkov, A., Zheng, Q., Rechavi, G., Liu, S., Bazak, L., Chen, J., Knisbacher, B. A., Lu, Y., Shams, I., Gajda, K., Farre, M., Kim, J., Lewin, H. A., Ma, J., Band, M., Bicker, A., Kranz, A., Mattheus, T., Schmidt, H., Seluanov, A., Azpurua, J., McGowen, M. R., Ben Jacob, E., Li, K., Peng, S., Zhu, X., Liao, X., Li, S., Krogh, Anders, Zhou, X., Brodsky, L. & Wang, J., 2014, In: Nature Communications. 5, 9 p., 3966.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE

    Valen, E., Pascarella, G., Chalk, A., Maeda, N., Kojima, M., Kawazu, C., Murata, M., Nishiyori, H., Lazarevic, D., Motti, D., Marstrand, T. T., Tang, M-H. E., Zhao, X., Krogh, A., Winther, O., Arakawa, T., Kawai, J., Wells, C., Daub, C., Harbers, M. & 4 others, Hayashizaki, Y., Gustincich, S., Sandelin, Albin Gustav & Carninci, P., 2009, In: Genome Research. 19, 2, p. 255-65 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

    Pedersen, J. S., Valen, E., Velazquez, A. M. V., Parker, B. J., Rasmussen, M., Lindgreen, S., Lilje, B., Tobin, D. J., Kelly, T. K., Vang, S., Andersson, R., Jones, P. A., Hoover, C. A., Tikhonov, A., Prokhortchouk, E., Rubin, E. M., Sandelin, A. G., Gilbert, M. T. P., Krogh, A., Willerslev, E. & 1 others, Orlando, L. A. A., 2014, In: Genome Research. 24, 3, p. 454-466 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History

    Liu, S., Huang, S., Chen, F., Zhao, L., Yuan, Y., Francis, S. S., Fang, L., Li, Z., Lin, L., Liu, R., Zhang, Y., Xu, H., Li, S., Zhou, Y., Davies, R. W., Liu, Q., Walters, R. G., Lin, K., Ju, J., Komeliussen, T. & 18 others, Yang, M. A., Fu, Q., Wang, J., Zhou, L., Krogh, Anders, Zhang, H., Wang, W., Chen, Z., Cai, Z., Yin, Y., Yang, H., Mao, M., Shendure, J., Wang, J., Albrechtsen, Anders, Jin, X., Nielsen, Rasmus & Xu, X., 2018, In: Cell. 175, 2, p. 347-359, e1-e7

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Hidden Markov models for prediction of protein features.

    Bystroff, C. & Krogh, Anders, 2008, In: Methods in Molecular Biology. 413, p. 173-98 25 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    High-throughput proteomics of breast cancer interstitial fluid: identification of tumor subtype-specific serologically relevant biomarkers

    Terkelsen, T., Pernemalm, M., Gromov, P., Borresen-Dale, A., Krogh, Anders, Haakensen, V. D., Lethio, J., Papaleo, E. & Gromova, I., 2021, In: Molecular Oncology. 15, 2, p. 429-461 33 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors

    Plass, M., Rasmussen, S. H. & Krogh, Anders, 14 Apr 2017, In: PLoS Computational Biology. 13, 4, 26 p., e1005460.

    Research output: Contribution to journal › Journal article › Research › peer-review

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