Mads Nielsen

Mads Nielsen

Professor

ORCID: 0000-0003-1535-068X

Publication year:
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251 - 300 out of 370Page size: 50
  1. 2013
  2. Published

    Sparse multi-scale diffeomorphic registration: the kernel bundle framework

    Sommer, Stefan Horst, Lauze, Francois Bernard, Nielsen, Mads & Pennec, X., 2013, In: Journal of Mathematical Imaging and Vision. 46, 3, p. 292-308 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Toward a theory of statistical tree-shape analysis

    Feragen, A., Lo, P. C. P., de Bruijne, Marleen, Nielsen, Mads & Lauze, Francois Bernard, 2013, In: I E E E Transactions on Pattern Analysis and Machine Intelligence. 35, 8, p. 2008-2021 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. 2014
  5. Published

    A method to determine the mammographic regions that show early changes due to the development of breast cancer

    Karemore, G., Nielsen, Mads, Karssemeijer, N. & Brandt, S. S., 2014, In: Physics in Medicine and Biology. 59, 22, p. 6759-6773 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Alzheimer's disease diagnostic performance of a multi-atlas hippocampal segmentation method using the harmonized hippocampal protocol

    Anker, C., Sørensen, L., Pai, A. S. U., Lyksborg, M., Lillholm, Martin, Conradsen, K., Larsen, R. & Nielsen, Mads, 2014. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  7. Published

    Automated hippocampal segmentation using new standardized manual segmentations from the harmonized hippocampal protocol

    Anker, C., Pai, A. S. U., Sørensen, L., Lyksborg, M., Conradsen, K., Larsen, R. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P33 1 p., IC-P-058.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  8. Published

    Automated hippocampal segmentation using new standardized manual segmentations from the harmonized hippocampal protocol

    Anker, C., Pai, A. S. U., Sørensen, L., Lyksborg, M., Conradsen, K., Larsen, R. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P415-P416 2 p., P1-288.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  9. Published

    Brain region's relative proximity as marker for Alzheimer's disease based on structural MRI

    Erleben, L. L., Sørensen, L. E., Pai, A. S. U., Dam, Erik Bjørnager, Nielsen, Mads & Initiative, A. D. N., 2014, In: BMC Medical Imaging. 14, 1, 12 p., 21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Breast tissue segmentation and mammographic risk scoring using deep learning

    Petersen, P. K., Nielsen, Mads, Diao, P., Karssemeijer, N. & Lillholm, Martin, 2014, Breast imaging: 12th International Workshop, IWDM 2014, Gifu City, Japan, June 29 – July 2, 2014. Proceedings. Fujita, H., Hara, T. & Muramatsu, C. (eds.). Springer Science+Business Media, p. 88-94 7 p. (Lecture notes in computer science, Vol. 8539).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  11. Published

    Breast tissue segmentation from x-ray radiographs

    Chen, C., Nielsen, Mads, Karssemeijer, N. & Brandt, S. S., 2014, In: Physics in Medicine and Biology. 59, 10, p. 2445-2456 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Computer analysis method for analyzing images involves applying algorithm to aligned images to extract quantitative estimate of difference in volume of object shown in second image by calculating change in volume of object

    Pai, A. S. U., Sørensen, L., Dam, E., Lillholm, Martin & Nielsen, Mads, 2014, IPC No. A61B-005/00, Patent No. US2014357978-A1, 4 Dec 2014, Priority date 4 Jun 2013, Priority No. US909666

    Research output: Patent

  13. Published

    Dementia diagnosis using MRI cortical thickness, shape, texture, and volumetry

    Sørensen, L., Pai, A. S. U., Anker, C., Balas, I., Lillholm, Martin, Igel, Christian & Nielsen, Mads, 2014, MICCAI 2014 Workshop Proceedings: Challenge on Computer-Aided Diagnosis of Dementia Based on Structural MRI Data. Bron, E. E., Smits, M., van Swieten, J. C., Niessen, W. J. & Klein, S. (eds.). Erasmus Universiteit Rotterdam, p. 111-118 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  14. Published

    Effect of inspiration on airway dimensions measured in maximal inspiration CT images of subjects without airflow limitation

    Petersen, Jens, Wille, M. M. W., Raket, L. L., Feragen, A., Pedersen, J. H., Nielsen, Mads, Dirksen, A. & de Bruijne, Marleen, 2014, In: European Radiology. 24, 9, p. 2319-2325 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Geometry and statistics: manifolds and stratified spaces

    Feragen, A., Nielsen, Mads, Jensen, E. B. V., Plessis, A. D. & Lauze, Francois Bernard, 2014, In: Journal of Mathematical Imaging and Vision. 50, 1, p. 1-4 4 p.

    Research output: Contribution to journal › Editorial › Research

  16. Published

    Graph-based fibre tractography computing shortest paths between regions of interest

    Kasenburg, N., Liptrot, M. G., Borgwardt, K., Ørting, S. N., Nielsen, Mads & Feragen, A., 2014. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  17. Published

    Mammographic texture resemblance generalizes as an independent risk factor for breast cancer

    Nielsen, Mads, Vachon, C. M., Scott, C. G., Chernoff, K., Karemore, G., Karssemeijer, N., Lillholm, Martin & Karsdal, M., 2014, In: Breast Cancer Research (Online Edition). 16, 2, 8 p., R37.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Optimal surface segmentation using flow lines to quantify airway abnormalities in chronic obstructive pulmonary disease

    Petersen, Jens, Nielsen, Mads, Lo, P. C. P., Nordenmark, L. H., Pedersen, J. J. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2014, In: Medical Image Analysis. 18, 3, p. 531-541 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Optimization over geodesics for exact principal geodesic analysis

    Sommer, Stefan Horst, Lauze, Francois Bernard & Nielsen, Mads, 2014, In: Advances in Computational Mathematics. 40, 2, p. 283-313 31 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Persistent hippocampal predominant atrophy in pre dementia as a marker for slower functional decline

    Pillai, J., Pai, A. S. U., Sørensen, L. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P538-P539 2 p., P2-186.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  21. Published

    Persistent hippocampal predominant atrophy in pre dementia as a marker for slower functional decline

    Pillai, J., Pai, A. S. U., Sørensen, L. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P34-P35 2 p., IC-P-061.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  22. Published

    Simultaneous registration and bilateral differential bias correction in brain MRI

    Zou, B., Pai, A. S. U., Sørensen, L. & Nielsen, Mads, 2014, Intelligent Imaging: Linking MR Acquisition and Processing.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  23. Published

    Stepwise inverse consistent Euler’s scheme for diffeomorphic image registration

    Pai, A. S. U., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L., Sporring, Jon & Nielsen, Mads, 2014, Biomedical Image Registration: 6th International Workshop, WBIR 2014, London, UK, July 7-8, 2014. Proceedings. Ourselin, S. & Modat, M. (eds.). Springer, p. 223-230 8 p. (Lecture notes in computer science, Vol. 8545).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  24. Published

    Validation of hippocampal texture for early Alzheimer’s disease detection: generalization to independent cohorts and extrapolation to very early signs of dementia

    Sørensen, L., Igel, Christian, Hansen, N. L., Lauritzen, Martin, Osler, Merete, Rostrup, Egill & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P133 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  25. Published

    White matter hypointensity growth rate correlates with rate of brain atrophy

    Pai, A. S. U., Sørensen, L., Darkner, Sune, Sporring, Jon, Rostrup, E. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P75-P76 2 p., IC-P-131.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  26. Published

    White matter hypointensity growth rate correlates with rate of brain atrophy

    Pai, A. S. U., Sørensen, L., Darkner, Sune, Sporring, Jon, Rostrup, E. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P414 1 p., P1-285.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  27. Published

    Computer based method for determining the size of an objects in an image

    Pai, A. S. U., Sørensen, L., Dam, E. B., Lillholm, Martin & Nielsen, Mads, 4 Dec 2014, Priority date 4 Dec 2014

    Research output: Patent

  28. 2015
  29. Published

    Adaptive time-stepping in dieomorphic image registration with bounded inverse consistency error

    Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015) . INRIA, p. 35-47

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  30. Published

    Adaptive time-stepping in diffeomorphic image registration with bounded inverse consistency error

    Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L. E. B. L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, The 18th International Conference on Medical Image Computing and Computer Assisted Intervention: proceedings. Technische Universität München , p. 35-47 13 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  31. Published

    Assessing breast cancer masking risk in full field digital mammography with automated texture analysis

    Kallenberg, M. G. J., Lillholm, Martin, Diao, P., Holland, K., Karssemeijer, N., Igel, Christian & Nielsen, Mads, 2015, 7th International Workshop on Breast Densitometry and Cancer Risk Assessment (Non-CME). University of California, p. 109 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review

  32. Published

    Assessing breast cancer masking risk with automated texture analysis in full field digital mammography

    Kallenberg, M. G. J., Lillholm, Martin, Diao, P., Petersen, K., Holland, K., Karssemeijer, N., Igel, Christian & Nielsen, Mads, 2015, Breast Imaging and Interventional. Radiological Society of North America, Inc, p. 218 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review

  33. Published

    Automated texture scoring for assessing breast cancer masking risk in full field digital mammography

    Kallenberg, M. G. J., Petersen, P. K., Lillholm, Martin, Jørgensen, D. R., Diao, P., Holland, K., Karssemeijer, N., Igel, Christian & Nielsen, Mads, 2015, In: Insights into Imaging. 6, 1, Supplement, 1 p., B-0212.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  34. Published

    Automatic segmentation of high-and low-field knee MRIs using knee image quantification with data from the osteoarthritis initiative

    Dam, Erik Bjørnager, Lillholm, Martin, Marques, J. & Nielsen, Mads, 2015, In: SPIE Journal of Medical Imaging. 2, 2, 13 p., 024001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Comparison of several computational pipelines for atrophy computation in longitudinal Alzheimers studies

    Pai, A. S. U., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L. E. B. L., Sporring, Jon & Nielsen, Mads, 2015. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  36. Published

    Diffeomorphic image registration with automatic time-step adjustment

    Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI). IEEE, p. 1085-1088 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  37. Published

    Hippocampal MRI texture is related to hippocampal glucose metabolism

    Sørensen, L., Pai, A. S. U., Igel, Christian & Nielsen, Mads, 2015, In: Alzheimer's & Dementia. 11, 7, Supplement, p. P55-P56 2 p., IC-P-077.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  38. Published

    Hippocampal texture predicts ad conversion in amyloid positive mild cognitively impaired subjects

    Nielsen, Mads, Igel, Christian & Sørensen, L., 2015, In: Neurodegenerative Diseases. 15, Suppl. 1, p. 262 1 p., ADPD5-0947.

    Research output: Contribution to journal › Conference abstract in journal › Research

  39. Published

    Hippocampus MRI T1 texture's relation to established Alzheimer's disease biomarkers and prediction of progression

    Nielsen, Mads, Sørensen, L., Pai, A. S. U., Igel, Christian & Lillholm, Martin, 2015. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  40. Published

    Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel

    Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Medical Imaging 2015: Image Processing. SPIE - International Society for Optical Engineering, 7 p. (Proceedings of S P I E - International Society for Optical Engineering, Vol. 9413).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  41. Published

    Improved Alzheimer's disease diagnostic performance using structural MRI: validation of the MRI combination biomarker that won the CADDementia challenge

    Sørensen, L., Lillholm, Martin, Pai, A. S. U., Balas, I., Anker, C., Igel, Christian & Nielsen, Mads, 2015, In: Insights into Imaging. 6, Supplement 1, 1 p., B-0077.

    Research output: Contribution to journal › Conference abstract in journal › Research

  42. Published

    Inter-observer agreement according to three methods of evaluating mammographic density and parenchymal pattern in a case control study: impact on relative risk of breast cancer

    Winkel, R. R., von Euler-Chelpin, My Catarina, Nielsen, Mads, Diao, P., Nielsen, Michael Bachmann, Uldall, W. Y. & Vejborg, I. M. M., 2015, In: BMC Cancer. 15, 14 p., 274.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Locally orderless registration for diffusion weighted images

    Jensen, H. G., Lauze, Francois Bernard, Nielsen, Mads & Darkner, Sune, 2015, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015: 18th international conference, Munich, Germany, October 5-9, 2015, Proceedings, Part II. Navab, N., Hornegger, J., Wells, W. M. & Frangi, A. F. (eds.). Springer, p. 305-312 8 p. (Lecture notes in computer science, Vol. 9350).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  44. Published

    Multimodal brain extraction from structural MRI using co-registered FDG-PET

    Jensen, H. G., Federspiel, F. V. K., Ptito, Maurice, Nielsen, Mads, Gjedde, Albert, Keller, S. H., Law, Ian, Kupers, Ron & Darkner, Sune, 2015. 12 p.

    Research output: Contribution to conference › Paper › Research

  45. Published

    Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015)

    Pennec, X. (ed.), Joshi, S. (ed.), Nielsen, Mads (ed.), Fletcher, T. P. (ed.), Durrleman, S. (ed.) & Sommer, Stefan Horst (ed.), 2015, INRIA. 173 p.

    Research output: Book/Report › Anthology › Research

  46. Published

    Relevance sampling

    Nielsen, Mads, Markussen, Bo & Loog, M., 2015, Proceedings of the Eight Workshop on Information Theoretic Methods in Science and Engineering. Rissanen, J., Harremoës, P., Forchhammer, S., Roos, T. & Myllymäki, P. (eds.). Department of Computer Science, University of Helsinki , p. 35-38 4 p. (Series of Publications B, Vol. B-2015-1).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  47. Published

    Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge

    Bron, E. E., Smits, M., van der Flier, W. M., Vrenken, H., Barkhof, F., Scheltens, P., Papma, J. M., Steketee, R. M. E., Méndez Orellana, C., Meijboom, R., Pinto, M., Meireles, J. R., Garrett, C., Bastos-Leite, A. J., Abdulkadir, A., Ronneberger, O., Amoroso, N., Bellotti, R., Cárdenas-Peña, D., Álvarez-Meza, A. M. & 30 others, Dolph, C. V., Iftekharuddin, K. M., Eskildsen, S. F., Coupé, P., Fonov, V. S., Franke, K., Gaser, C., Ledig, C., Guerrero, R., Tong, T., Gray, K. R., Moradi, E., Tohka, J., Routier, A., Durrleman, S., Sarica, A., Di Fatta, G., Sensi, F., Chincarini, A., Smith, G. M., Stoyanov, Z. V., Sørensen, L. E. B. L., Nielsen, Mads, Tangaro, S., Inglese, P., Wachinger, C., Reuter, M., van Swieten, J. C., Niessen, W. J. & Klein, S., 2015, In: NeuroImage. 111, p. 562-579 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. 2016
  49. Published

    Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation

    Michalkiewicz, M. D., Pai, A. S. U., Leung, K. K., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L., Sporring, Jon & Nielsen, Mads, 2016, Medical imaging 2016: Image processing. Styner, M. A. & Angelini, E. D. (eds.). SPIE - International Society for Optical Engineering, 6 p. 978406. (Progress in Biomedical Optics and Imaging).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  50. Published

    Deformation-based atrophy computation by surface propagation and its application to Alzheimer’s disease

    Pai, A. S. U., Sporring, Jon, Darkner, Sune, Dam, Erik Bjørnager, Lillholm, Martin, Jørgensen, D., Oh, J., Chen, G., Suhy, J., Sørensen, L. & Nielsen, Mads, 2016, In: SPIE Journal of Medical Imaging. 3, 1, 11 p., 014005.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Do dementia biomarkers have a sigmoid trajectory? Insights from non-linear mixed effects modeling

    Pai, A. S. U., Sommer, Stefan Horst, Raket, L. L., Sørensen, L. & Nielsen, Mads, 2016, In: Alzheimer's & Dementia. 12, 7, Supplement, p. P356 1 p., O4-09-06.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  52. Published

    Early detection of Alzheimer's disease using MRI hippocampal texture

    Sørensen, L., Igel, Christian, Hansen, N. L., Osler, Merete, Lauritzen, Martin, Rostrup, Egill & Nielsen, Mads, 2016, In: Human Brain Mapping. 37, 3, p. 1148-1161 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Kernel bundle diffeomorphic image registration using stationary velocity fields and Wendland basis functions

    Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2016, In: IEEE Transactions on Medical Imaging. 35, 6, p. 1369-1380 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Learning density independent texture features

    Kallenberg, M. G. J., Nielsen, Mads, Holland, K., Karssemeijer, N., Igel, Christian & Lillholm, Martin, 2016, Breast Imaging: 13th International Workshop, IWDM 2016, Malmö, Sweden, June 19-22, 2016, Proceedings. Tingberg, A., Lång, K. & Timberg, P. (eds.). Springer, p. 299-306 8 p. (Lecture notes in computer science, Vol. 9699).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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