Adjustable chain trees for proteins
Research output: Contribution to journal › Journal article › Research › peer-review
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Adjustable chain trees for proteins. / Winter, Pawel; Fonseca, Rasmus.
In: Journal of Computational Biology, Vol. 19, No. 1, 2012, p. 83-99.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - Adjustable chain trees for proteins
AU - Winter, Pawel
AU - Fonseca, Rasmus
PY - 2012
Y1 - 2012
N2 - A chain tree is a data structure for changing protein conformations. It enables very fast detection of clashes and free energy potential calculations. A modified version of chain trees that adjust themselves to the changing conformations of folding proteins is introduced. This results in much tighter bounding volume hierarchies and therefore fewer intersection checks. Computational results indicate that the efficiency of the adjustable chain trees is significantly improved compared to the traditional chain trees.
AB - A chain tree is a data structure for changing protein conformations. It enables very fast detection of clashes and free energy potential calculations. A modified version of chain trees that adjust themselves to the changing conformations of folding proteins is introduced. This results in much tighter bounding volume hierarchies and therefore fewer intersection checks. Computational results indicate that the efficiency of the adjustable chain trees is significantly improved compared to the traditional chain trees.
U2 - 10.1089/cmb.2010.0320
DO - 10.1089/cmb.2010.0320
M3 - Journal article
C2 - 21548812
VL - 19
SP - 83
EP - 99
JO - Journal of Computational Biology
JF - Journal of Computational Biology
SN - 1066-5277
IS - 1
ER -
ID: 33926272