Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models. / Stovgaard, Kasper; Andreetta, Christian; Ferkinghoff-Borg, Jesper; Hamelryck, Thomas Wim.

In: B M C Bioinformatics, Vol. 11, 01.01.2010, p. 429.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Stovgaard, K, Andreetta, C, Ferkinghoff-Borg, J & Hamelryck, TW 2010, 'Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models', B M C Bioinformatics, vol. 11, pp. 429. https://doi.org/10.1186/1471-2105-11-429

APA

Stovgaard, K., Andreetta, C., Ferkinghoff-Borg, J., & Hamelryck, T. W. (2010). Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models. B M C Bioinformatics, 11, 429. https://doi.org/10.1186/1471-2105-11-429

Vancouver

Stovgaard K, Andreetta C, Ferkinghoff-Borg J, Hamelryck TW. Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models. B M C Bioinformatics. 2010 Jan 1;11:429. https://doi.org/10.1186/1471-2105-11-429

Author

Stovgaard, Kasper ; Andreetta, Christian ; Ferkinghoff-Borg, Jesper ; Hamelryck, Thomas Wim. / Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models. In: B M C Bioinformatics. 2010 ; Vol. 11. pp. 429.

Bibtex

@article{4e9d652f4bab44838f695f5f64794497,
title = "Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models",
abstract = "Genome sequencing projects have expanded the gap between the amount of known protein sequences and structures. The limitations of current high resolution structure determination methods make it unlikely that this gap will disappear in the near future. Small angle X-ray scattering (SAXS) is an established low resolution method for routinely determining the structure of proteins in solution. The purpose of this study is to develop a method for the efficient calculation of accurate SAXS curves from coarse-grained protein models. Such a method can for example be used to construct a likelihood function, which is paramount for structure determination based on statistical inference.",
keywords = "Amino Acid Sequence, Models, Molecular, Models, Statistical, Protein Conformation, Proteins, Scattering, Small Angle, Solutions, X-Ray Diffraction",
author = "Kasper Stovgaard and Christian Andreetta and Jesper Ferkinghoff-Borg and Hamelryck, {Thomas Wim}",
year = "2010",
month = jan,
day = "1",
doi = "10.1186/1471-2105-11-429",
language = "English",
volume = "11",
pages = "429",
journal = "B M C Bioinformatics",
issn = "1471-2105",
publisher = "BioMed Central Ltd.",

}

RIS

TY - JOUR

T1 - Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models

AU - Stovgaard, Kasper

AU - Andreetta, Christian

AU - Ferkinghoff-Borg, Jesper

AU - Hamelryck, Thomas Wim

PY - 2010/1/1

Y1 - 2010/1/1

N2 - Genome sequencing projects have expanded the gap between the amount of known protein sequences and structures. The limitations of current high resolution structure determination methods make it unlikely that this gap will disappear in the near future. Small angle X-ray scattering (SAXS) is an established low resolution method for routinely determining the structure of proteins in solution. The purpose of this study is to develop a method for the efficient calculation of accurate SAXS curves from coarse-grained protein models. Such a method can for example be used to construct a likelihood function, which is paramount for structure determination based on statistical inference.

AB - Genome sequencing projects have expanded the gap between the amount of known protein sequences and structures. The limitations of current high resolution structure determination methods make it unlikely that this gap will disappear in the near future. Small angle X-ray scattering (SAXS) is an established low resolution method for routinely determining the structure of proteins in solution. The purpose of this study is to develop a method for the efficient calculation of accurate SAXS curves from coarse-grained protein models. Such a method can for example be used to construct a likelihood function, which is paramount for structure determination based on statistical inference.

KW - Amino Acid Sequence

KW - Models, Molecular

KW - Models, Statistical

KW - Protein Conformation

KW - Proteins

KW - Scattering, Small Angle

KW - Solutions

KW - X-Ray Diffraction

U2 - 10.1186/1471-2105-11-429

DO - 10.1186/1471-2105-11-429

M3 - Journal article

C2 - 20718956

VL - 11

SP - 429

JO - B M C Bioinformatics

JF - B M C Bioinformatics

SN - 1471-2105

ER -

ID: 33977225