Comparative metagenomics of eight geographically remote terrestrial hot springs

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

Comparative metagenomics of eight geographically remote terrestrial hot springs. / Menzel, Peter; Islin, Sóley Ruth; Rike, Anne Gunn; Lin, Lianbing; Zhang, Qi; Contursi, Patrizia; Moracci, Marco; Kristjansson, Jakob K; Bolduc, Benjamin; Gavrilov, Sergey; Ravin, Nikolai; Mardanov, Andrey; Bonch-Osmolovskaya, Elizaveta; Young, Mark; Krogh, Anders; Peng, Xu.

In: Microbial Ecology, Vol. 70, No. 2, 2015, p. 411-424.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Menzel, P, Islin, SR, Rike, AG, Lin, L, Zhang, Q, Contursi, P, Moracci, M, Kristjansson, JK, Bolduc, B, Gavrilov, S, Ravin, N, Mardanov, A, Bonch-Osmolovskaya, E, Young, M, Krogh, A & Peng, X 2015, 'Comparative metagenomics of eight geographically remote terrestrial hot springs', Microbial Ecology, vol. 70, no. 2, pp. 411-424. https://doi.org/10.1007/s00248-015-0576-9

APA

Menzel, P., Islin, S. R., Rike, A. G., Lin, L., Zhang, Q., Contursi, P., Moracci, M., Kristjansson, J. K., Bolduc, B., Gavrilov, S., Ravin, N., Mardanov, A., Bonch-Osmolovskaya, E., Young, M., Krogh, A., & Peng, X. (2015). Comparative metagenomics of eight geographically remote terrestrial hot springs. Microbial Ecology, 70(2), 411-424. https://doi.org/10.1007/s00248-015-0576-9

Vancouver

Menzel P, Islin SR, Rike AG, Lin L, Zhang Q, Contursi P et al. Comparative metagenomics of eight geographically remote terrestrial hot springs. Microbial Ecology. 2015;70(2):411-424. https://doi.org/10.1007/s00248-015-0576-9

Author

Menzel, Peter ; Islin, Sóley Ruth ; Rike, Anne Gunn ; Lin, Lianbing ; Zhang, Qi ; Contursi, Patrizia ; Moracci, Marco ; Kristjansson, Jakob K ; Bolduc, Benjamin ; Gavrilov, Sergey ; Ravin, Nikolai ; Mardanov, Andrey ; Bonch-Osmolovskaya, Elizaveta ; Young, Mark ; Krogh, Anders ; Peng, Xu. / Comparative metagenomics of eight geographically remote terrestrial hot springs. In: Microbial Ecology. 2015 ; Vol. 70, No. 2. pp. 411-424.

Bibtex

@article{e9ddc5a842b1437e86e1968814265a79,
title = "Comparative metagenomics of eight geographically remote terrestrial hot springs",
abstract = "Hot springs are natural habitats for thermophilic Archaea and Bacteria. In this paper, we present the metagenomic analysis of eight globally distributed terrestrial hot springs from China, Iceland, Italy, Russia, and the USA with a temperature range between 61 and 92 (∘)C and pH between 1.8 and 7. A comparison of the biodiversity and community composition generally showed a decrease in biodiversity with increasing temperature and decreasing pH. Another important factor shaping microbial diversity of the studied sites was the abundance of organic substrates. Several species of the Crenarchaeal order Thermoprotei were detected, whereas no single bacterial species was found in all samples, suggesting a better adaptation of certain archaeal species to different thermophilic environments. Two hot springs show high abundance of Acidithiobacillus, supporting the idea of a true thermophilic Acidithiobacillus species that can thrive in hyperthermophilic environments. Depending on the sample, up to 58 % of sequencing reads could not be assigned to a known phylum, reinforcing the fact that a large number of microorganisms in nature, including those thriving in hot environments remain to be isolated and characterized.",
author = "Peter Menzel and Islin, {S{\'o}ley Ruth} and Rike, {Anne Gunn} and Lianbing Lin and Qi Zhang and Patrizia Contursi and Marco Moracci and Kristjansson, {Jakob K} and Benjamin Bolduc and Sergey Gavrilov and Nikolai Ravin and Andrey Mardanov and Elizaveta Bonch-Osmolovskaya and Mark Young and Anders Krogh and Xu Peng",
year = "2015",
doi = "10.1007/s00248-015-0576-9",
language = "English",
volume = "70",
pages = "411--424",
journal = "Microbial Ecology",
issn = "0095-3628",
publisher = "Springer",
number = "2",

}

RIS

TY - JOUR

T1 - Comparative metagenomics of eight geographically remote terrestrial hot springs

AU - Menzel, Peter

AU - Islin, Sóley Ruth

AU - Rike, Anne Gunn

AU - Lin, Lianbing

AU - Zhang, Qi

AU - Contursi, Patrizia

AU - Moracci, Marco

AU - Kristjansson, Jakob K

AU - Bolduc, Benjamin

AU - Gavrilov, Sergey

AU - Ravin, Nikolai

AU - Mardanov, Andrey

AU - Bonch-Osmolovskaya, Elizaveta

AU - Young, Mark

AU - Krogh, Anders

AU - Peng, Xu

PY - 2015

Y1 - 2015

N2 - Hot springs are natural habitats for thermophilic Archaea and Bacteria. In this paper, we present the metagenomic analysis of eight globally distributed terrestrial hot springs from China, Iceland, Italy, Russia, and the USA with a temperature range between 61 and 92 (∘)C and pH between 1.8 and 7. A comparison of the biodiversity and community composition generally showed a decrease in biodiversity with increasing temperature and decreasing pH. Another important factor shaping microbial diversity of the studied sites was the abundance of organic substrates. Several species of the Crenarchaeal order Thermoprotei were detected, whereas no single bacterial species was found in all samples, suggesting a better adaptation of certain archaeal species to different thermophilic environments. Two hot springs show high abundance of Acidithiobacillus, supporting the idea of a true thermophilic Acidithiobacillus species that can thrive in hyperthermophilic environments. Depending on the sample, up to 58 % of sequencing reads could not be assigned to a known phylum, reinforcing the fact that a large number of microorganisms in nature, including those thriving in hot environments remain to be isolated and characterized.

AB - Hot springs are natural habitats for thermophilic Archaea and Bacteria. In this paper, we present the metagenomic analysis of eight globally distributed terrestrial hot springs from China, Iceland, Italy, Russia, and the USA with a temperature range between 61 and 92 (∘)C and pH between 1.8 and 7. A comparison of the biodiversity and community composition generally showed a decrease in biodiversity with increasing temperature and decreasing pH. Another important factor shaping microbial diversity of the studied sites was the abundance of organic substrates. Several species of the Crenarchaeal order Thermoprotei were detected, whereas no single bacterial species was found in all samples, suggesting a better adaptation of certain archaeal species to different thermophilic environments. Two hot springs show high abundance of Acidithiobacillus, supporting the idea of a true thermophilic Acidithiobacillus species that can thrive in hyperthermophilic environments. Depending on the sample, up to 58 % of sequencing reads could not be assigned to a known phylum, reinforcing the fact that a large number of microorganisms in nature, including those thriving in hot environments remain to be isolated and characterized.

U2 - 10.1007/s00248-015-0576-9

DO - 10.1007/s00248-015-0576-9

M3 - Journal article

C2 - 25712554

VL - 70

SP - 411

EP - 424

JO - Microbial Ecology

JF - Microbial Ecology

SN - 0095-3628

IS - 2

ER -

ID: 132349695