Sune Darkner

Sune Darkner

Associate Professor

ORCID: 0000-0001-6114-7100

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  1. Published

    cRedAnno+: Annotation Exploitation In Self-Explanatory Lung Nodule Diagnosis

    Lu, J., Yin, C., Erleben, Kenny, Nielsen, Michael Bachmann & Darkner, Sune, 2023, 2023 IEEE International Symposium on Biomedical Imaging, ISBI 2023. IEEE Computer Society Press, (Proceedings - International Symposium on Biomedical Imaging, Vol. 2023-April).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  2. Published

    White matter hypointensity growth rate correlates with rate of brain atrophy

    Pai, A. S. U., Sørensen, L., Darkner, Sune, Sporring, Jon, Rostrup, E. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P414 1 p., P1-285.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  3. Published

    White matter hypointensity growth rate correlates with rate of brain atrophy

    Pai, A. S. U., Sørensen, L., Darkner, Sune, Sporring, Jon, Rostrup, E. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P75-P76 2 p., IC-P-131.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  4. Published

    U-Time: A Fully Convolutional Network for Time Series Segmentation Applied to Sleep Staging

    Perslev, Mathias, Hejselbak Jensen, M., Darkner, Sune, Jørgen Jennum, P. & Igel, Christian, 1 Oct 2019, Advances in Neural Information Processing Systems 32 (NIPS 2019). NIPS Proceedings, Vol. 32. p. 4415-4426

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  5. Published

    U-Sleep: resilient high-frequency sleep staging

    Perslev, Mathias, Darkner, Sune, Kempfner, L., Nikolic, M., Jennum, Poul & Igel, Christian, 15 Apr 2021, In: npj Digital Medicine. 4, 1, 12 p., 72.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    TopAwaRe: Topology-Aware Registration

    Nielsen, R. K., Darkner, Sune & Feragen, A., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer VS, p. 364-372 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11765 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  7. Published

    The minimal energetic requirement of sustained awareness after brain injury

    Stender, J., Mortensen, K. N., Thibaut, A., Darkner, Sune, Laureys, S., Gjedde, Albert & Kupers, Ron, 6 Jun 2016, In: Current Biology. 26, 11, p. 1494-1499 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    The cartilage bone junction and its implications for deep canal hearing instrument fittings

    Nielsen, C. & Darkner, Sune, 2011, In: Hearing Journal. 64, 3, p. 35-42 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    The added effect of artificial intelligence on physicians’ performance in detecting thoracic pathologies on CT and chest X-ray: A systematic review

    Li, D., Pehrson, Lea Marie, Lauridsen, C. A., Tøttrup, L., Fraccaro, M., Elliott, Desmond, Zajac, Hubert Dariusz, Darkner, Sune, Carlsen, Jonathan Frederik & Nielsen, Michael Bachmann, 2021, In: Diagnostics. 11, 12, 17 p., 2206.

    Research output: Contribution to journal › Review › Research › peer-review

  10. Published

    Structural parcellation of the thalamus using shortest-path tractography

    Kasenburg, N., Darkner, Sune, Hahn, U., Liptrot, M. G. & Feragen, A., 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI). IEEE, p. 559-563 5 p. 7493330

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  11. Published

    Streamlet Tractography

    Liptrot, M. G., Darkner, Sune, Feragen, A. & Lauze, Francois Bernard, Apr 2017.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  12. Published

    Stepwise inverse consistent Euler’s scheme for diffeomorphic image registration

    Pai, A. S. U., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L., Sporring, Jon & Nielsen, Mads, 2014, Biomedical Image Registration: 6th International Workshop, WBIR 2014, London, UK, July 7-8, 2014. Proceedings. Ourselin, S. & Modat, M. (eds.). Springer, p. 223-230 8 p. (Lecture notes in computer science, Vol. 8545).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  13. Published

    Safety and Efficacy of Mesenchymal Stem Cells for Radiation-Induced Xerostomia: A Randomized, Placebo-Controlled Phase 1/2 Trial (MESRIX)

    Grønhøj, C., Jensen, D. H., Vester-Glowinski, Peter Viktor, Jensen, S. B., Bardow, A., Oliveri, R. S., Fog, L. M., Specht, Lena, Thomsen, C., Darkner, Sune, Jensen, M., Müller, V., Kiss, K., Agander, T., Andersen, E., Fischer-Nielsen, A. & von Buchwald, Christian, 1 Jul 2018, In: International Journal of Radiation Oncology, Biology, Physics. 101, 3, p. 581-592 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    SE(3) Group Convolutional Neural Networks and a Study on Group Convolutions and Equivariance for DWI Segmentation

    Liu, Renfei, Lauze, Francois Bernard, Bekkers, E. J., Erleben, Kenny & Darkner, Sune, 2023, Research Square, 32 p.

    Research output: Working paper › Preprint

  15. Published

    RootPainter3D: Interactive-machine-learning enables rapid and accurate contouring for radiotherapy

    Smith, Abraham George, Petersen, Jens, Terrones-Campos, C., Berthelsen, A. K., Forbes, N. J., Darkner, Sune, Specht, Lena & Vogelius, I. R., 2022, In: Medical Physics. 49, 1, p. 461-473

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Revisiting Transformer-based Models for Long Document Classification

    Dai, X., Chalkidis, Ilias, Darkner, Sune & Elliott, Desmond, 2022, Findings of the Association for Computational Linguistics: EMNLP 2022. Association for Computational Linguistics, p. 7212–7230

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  17. Published

    Restoring drifted electron microscope volumes using synaptic vesicles at sub-pixel accuracy

    Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 2020, In: Communications Biology. 3, 1, 7 p., ´81.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Reducing Annotation Need in Self-explanatory Models for Lung Nodule Diagnosis

    Lu, J., Yin, C., Krause, Oswin, Erleben, Kenny, Nielsen, Michael Bachmann & Darkner, Sune, 2022, Interpretability of Machine Intelligence in Medical Image Computing. Reyes, M., Abreu, PH. & Cardoso, J. (eds.). Springer, p. 33-43 (Lecture Notes in Computer Science, Vol. 13611).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  19. Published

    Reconstructing Binary Signals from Local Histograms

    Sporring, Jon & Darkner, Sune, 21 Mar 2022, In: Entropy. 24, 3, p. 1-11 433.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Pseudo-Label Guided Image Synthesis for Semi-Supervised COVID-19 Pneumonia Infection Segmentation

    Lyu, F., Ye, M., Carlsen, J. F., Erleben, Kenny, Darkner, Sune & Yuen, P. C., 2023, In: IEEE Transactions on Medical Imaging. 42, 3, p. 797-809

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Performance and Agreement When Annotating Chest X-ray Text Reports - A Preliminary Step in the Development of a Deep Learning-Based Prioritization and Detection System

    Li, D., Pehrson, Lea Marie, Bonnevie, R., Fraccaro, M., Thrane, J., Tøttrup, L., Lauridsen, C. A., Balaganeshan, Sedrah Butt, Jankovic, J., Andersen, T. T., Mayar, A., Hansen, Kristoffer Lindskov, Carlsen, Jonathan Frederik, Darkner, Sune & Nielsen, Michael Bachmann, 2023, In: Diagnostics. 13, 6, 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    OpenJaw Dataset

    Gholamalizadeh, T., Darkner, Sune, Søndergaard, P. & Erleben, Kenny, 2021

    Research output: Non-textual form › Dataset › Research

  23. Published

    Open-Full-Jaw: An open-access dataset and pipeline for finite element models of human jaw

    Gholamalizadeh, T., nsv780, nsv780, Ferguson, Z., Schneider, T., Panozzo, D., Darkner, Sune, Makaremi, M., Chan, F., Lempel Søndergaard, P. & Erleben, Kenny, 1 Sep 2022, In: Computer Methods and Programs in Biomedicine. 224, 17 p., 107009.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Multimodal brain extraction from structural MRI using co-registered FDG-PET

    Jensen, H. G., Federspiel, F. V. K., Ptito, Maurice, Nielsen, Mads, Gjedde, Albert, Keller, S. H., Law, Ian, Kupers, Ron & Darkner, Sune, 2015. 12 p.

    Research output: Contribution to conference › Paper › Research

  25. Published

    Mandibular Teeth Movement Variations in Tipping Scenario: A Finite Element Study on Several Patients

    Gholamalizadeh, T., Darkner, Sune, Cattaneo, P. M., Søndergaard, P. & Erleben, Kenny, 2020. 10 p.

    Research output: Contribution to conference › Paper › Research

  26. Published

    Locally orderless registration for diffusion weighted images

    Jensen, H. G., Lauze, Francois Bernard, Nielsen, Mads & Darkner, Sune, 2015, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015: 18th international conference, Munich, Germany, October 5-9, 2015, Proceedings, Part II. Navab, N., Hornegger, J., Wells, W. M. & Frangi, A. F. (eds.). Springer, p. 305-312 8 p. (Lecture notes in computer science, Vol. 9350).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  27. Published

    Locally orderless registration code: fast normalized mutual information and P-Norm for MATLAB

    Darkner, Sune & Sporring, Jon, 2012

    Research output: Non-textual form › Computer programme › Research

  28. Published

    Locally orderless registration

    Darkner, Sune & Sporring, Jon, 2013, In: I E E E Transactions on Pattern Analysis and Machine Intelligence. 35, 6, p. 1437-1450 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Locally Orderless Registration

    Darkner, Sune & Sporring, Jon, 2012, arxiv.org, 14 p.

    Research output: Working paper › Preprint

  30. Published

    Localized cerebral atrophy acceleration during Alzheimer’s disease

    Pai, A. S. U., Sørensen, L., Darkner, Sune, Lillholm, Martin, Dam, E. B., Sporring, Jon & Nielsen, Mads, 2013, In: Alzheimer's & Dementia. 9, 4, Supplement, p. P151 1 p., O1-10-06.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  31. Published

    Localized cerebral atrophy acceleration during Alzheimer’s disease

    Pai, A. S. U., Sørensen, L., Darkner, Sune, Lillholm, Martin, Dam, E. B., Sporring, Jon & Nielsen, Mads, 2013, In: Alzheimer's & Dementia. 9, 4, Supplement, p. P36–P37 2 p., IC-P-059.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  32. Published

    LibHip: An open-access hip joint model repository suitable for finite element method simulation

    nsv780, nsv780, Gholamalizadeh, T., Ferguson, Z., Schneider, T., Nielsen, Michael Bachmann, Panozzo, D., Darkner, Sune & Erleben, Kenny, 2022, In: Computer Methods and Programs in Biomedicine. 226, 14 p., 107140.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Kernel bundle diffeomorphic image registration using stationary velocity fields and Wendland basis functions

    Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2016, In: IEEE Transactions on Medical Imaging. 35, 6, p. 1369-1380 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Jet-based local image descriptors

    Boesen Lindbo Larsen, A., Darkner, Sune, Dahl, A. L. & Steenstrup Pedersen, Kim, 2012, Computer Vision – ECCV 2012: 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part III. Fitzgibbon, A., Lazebnik, S., Perona, P., Sato, Y. & Schmid, C. (eds.). Springer, p. 638-650 13 p. (Lecture notes in computer science, Vol. 7574).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  35. Published

    Jacobians for Lebesgue registration for a range of similarity measures

    Sporring, Jon & Darkner, Sune, 2011, Department of Computer Science, University of Copenhagen. 8 p. (Koebenhavns Universitet. Datalogisk Institut. Rapport; No. 04/2011).

    Research output: Book/Report › Report › Research

  36. Published

    Inter- and Intra-Observer Agreement When Using a Diagnostic Labeling Scheme for Annotating Findings on Chest X-rays—An Early Step in the Development of a Deep Learning-Based Decision Support System

    Li, D., Pehrson, Lea Marie, Tøttrup, L., Fraccaro, M., Bonnevie, R., Thrane, J., Sørensen, P. J., Rykkje, A., Andersen, T. T., Steglich-Arnholm, H., Stærk, D. M. R., Borgwardt, L., Hansen, Kristoffer Lindskov, Darkner, Sune, Carlsen, Jonathan Frederik & Nielsen, Michael Bachmann, 2022, In: Diagnostics. 12, 12, 3112.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Information-Theoretic Registration with Explicit Reorientation of Diffusion-Weighted Images

    Jensen, H. G., Lauze, Francois Bernard & Darkner, Sune, 2022, In: Journal of Mathematical Imaging and Vision. 64, p. 1-16

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel

    Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Medical Imaging 2015: Image Processing. SPIE - International Society for Optical Engineering, 7 p. (Proceedings of S P I E - International Society for Optical Engineering, Vol. 9413).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  39. Published

    Hippocampal texture provides volume-independent information for Alzheimer's disease diagnosis

    Sørensen, L., Pai, A. S. U., Darkner, Sune, Suhy, J., Oh, J., Chen, G., Igel, Christian & Nielsen, M., 2012, In: Alzheimer's & Dementia. 8, 4, Supplement, p. P162–P163 2 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  40. Published

    Hippocampal texture provides volume independent information for Alzheimer's diagnosis

    Sørensen, L., Pai, A. S. U., Darkner, Sune, Suhy, J., Oh, J., Chen, G., Igel, Christian & Nielsen, Mads, 2012, In: Alzheimer's & Dementia. 8, 4, Supplement, p. 15 1 p., IC-P-013.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  41. Published

    Hippocampal texture predicts rate of cognitive decline in mild cognitive impairment

    Pai, A. S. U., Pillai, J. A., Sørensen, L., Darkner, Sune, Sommer, Stefan Horst & Nielsen, Mads, Jul 2017, In: Alzheimer's & Dementia. 13, 7, supplement, p. P1356 1 p., P4-225.

    Research output: Contribution to journal › Conference abstract in journal › Research

  42. Published

    Hippocampal texture predicts one-year hippocampal atrophy in mild cognitively impaired subjects

    Sørensen, L., Pai, A. S. U., Mysling, P., Darkner, Sune, Chen, G., Oh, J., Suhy, J., Igel, Christian & Nielsen, Mads, 2013. 1 p.

    Research output: Contribution to conference › Poster › Research › peer-review

  43. Published

    Higher-order momentum distributions and locally affine LDDMM registration

    Sommer, Stefan Horst, Nielsen, Mads, Darkner, Sune & Pennec, X., 2013, In: S I A M Journal on Imaging Sciences. 6, 1, p. 341-367 27 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Global Position Prediction for Interactive Motion Capture

    Schreiner, Paul, Perepichka, M., Lewis, H., Darkner, Sune, Kry, P. G., Erleben, Kenny & Zordan, V. B., 2021, In: Proceedings of the ACM on Computer Graphics and Interactive Techniques. 4, 3, p. 1-16 3479985.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Generalized Partial Volume: an inferior density estimator to Parzen Windows for normalized mutual information

    Darkner, Sune & Sporring, Jon, 2011, Information Processing in Medical Imaging: 22nd International Conference, IPMI 2011, Kloster Irsee, Germany, July 3-8, 2011. Proceedings. Székely, G. & Hahn, H. K. (eds.). Springer, p. 436-447 12 p. (Lecture notes in computer science, Vol. 6801).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  46. Published

    First-in-man mesenchymal stem cells for radiation-induced xerostomia (MESRIX): study protocol for a randomized controlled trial.

    Grønhøj, C., Jensen, D. H., Glovinski, P. V., mpw981, M., Jensen, A. B., Oliveri, R. S., Specht, Lena, Thomsen, C., Darkner, Sune, Kiss, K., Fischer-Nielsen, A. & von Buchwald, Christian, 2017, In: Trials. 18, 1, 10 p., 108.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    First Order Locally Orderless Registration

    Darkner, Sune, Vidarte, J. D. T. & Lauze, Francois Bernard, 2021, Scale Space and Variational Methods in Computer Vision - 8th International Conference, SSVM 2021, Proceedings. Elmoataz, A., Fadili, J., Quéau, Y., Rabin, J. & Simon, L. (eds.). Springer, p. 177-188 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 12679 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  48. Published

    Finding significantly connected voxels based on histograms of connection strengths

    Kasenburg, N., Pedersen, M. V. & Darkner, Sune, 2016, Medical Imaging 2016: Image Processing. Styner, M. A. & Angelini, E. D. (eds.). SPIE - International Society for Optical Engineering, 7 p. 978431. (Progress in Biomedical Optics and Imaging; No. 39, Vol. 17).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  49. Published

    Fast Vortex Particle Method for Fluid-Character Interaction

    Meldgaard, A., Darkner, Sune & Erleben, Kenny, 2022, Proceedings of Graphics Interface 2022: Montréal, Quebec, 16 - 19 May 2022. ACM Press, p. 84-91

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  50. Published

    Fast Vortex Particle Method for Fluid-Character Interaction

    Meldgaard, A., Darkner, Sune & Erleben, Kenny, 2022, In: OpenReview.net. 2022, 7 p.

    Research output: Contribution to journal › Conference article › Research

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ID: 18038443