Sune Darkner
Associate Professor
Image Analysis, Computational Modelling and Geometry
Universitetsparken 1
2100 København Ø
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Collision-constrained deformable image registration framework for discontinuity management
Alscher, Thomas Michael, Erleben, Kenny & Darkner, Sune, 2023, In: PLoS ONE. 18, 8, 15 p., e0290243.Research output: Contribution to journal › Journal article › Research › peer-review
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Jet-based local image descriptors
Boesen Lindbo Larsen, A., Darkner, Sune, Dahl, A. L. & Steenstrup Pedersen, Kim, 2012, Computer Vision – ECCV 2012: 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part III. Fitzgibbon, A., Lazebnik, S., Perona, P., Sato, Y. & Schmid, C. (eds.). Springer, p. 638-650 13 p. (Lecture notes in computer science, Vol. 7574).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Contact modeling from images using cut finite element solvers
Claus, S., Kerfriden, P., nsv780, nsv780, Darkner, Sune, Erleben, Kenny & Wong, Christian, 2021, In: Advanced Modeling and Simulation in Engineering Sciences. 8, 1, p. 1-23 13.Research output: Contribution to journal › Journal article › Research › peer-review
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Revisiting Transformer-based Models for Long Document Classification
Dai, X., Chalkidis, Ilias, Darkner, Sune & Elliott, Desmond, 2022, Findings of the Association for Computational Linguistics: EMNLP 2022. Association for Computational Linguistics, p. 7212–7230Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Generalized Partial Volume: an inferior density estimator to Parzen Windows for normalized mutual information
Darkner, Sune & Sporring, Jon, 2011, Information Processing in Medical Imaging: 22nd International Conference, IPMI 2011, Kloster Irsee, Germany, July 3-8, 2011. Proceedings. Székely, G. & Hahn, H. K. (eds.). Springer, p. 436-447 12 p. (Lecture notes in computer science, Vol. 6801).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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A hyper elasticity method for interactive virtual design of hearing aids: a parallel method for general non-linear hyper elasticity modeling
Darkner, Sune & Erleben, Kenny, 2011, In: Visual Computer. 27, 6, p. 645-653 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Locally orderless registration
Darkner, Sune & Sporring, Jon, 2013, In: I E E E Transactions on Pattern Analysis and Machine Intelligence. 35, 6, p. 1437-1450 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Data driven constraints for the SVM
Darkner, Sune & Clemmensen, L. H., 2012, Machine Learning in Medical Imaging: Third International Workshop, MLMI 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 1, 2012, Revised Selected Papers. Wang, F., Shen, D., Yan, P. & Suzuki, K. (eds.). Springer, p. 70-77 8 p. (Lecture notes in computer science, Vol. 7588).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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First Order Locally Orderless Registration
Darkner, Sune, Vidarte, J. D. T. & Lauze, Francois Bernard, 2021, Scale Space and Variational Methods in Computer Vision - 8th International Conference, SSVM 2021, Proceedings. Elmoataz, A., Fadili, J., Quéau, Y., Rabin, J. & Simon, L. (eds.). Springer, p. 177-188 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 12679 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Collocation for diffeomorphic deformations in medical image registration
Darkner, Sune, Pai, A. S. U., Liptrot, M. G. & Sporring, Jon, 2018, In: I E E E Transactions on Pattern Analysis and Machine Intelligence. 40, 7, p. 1570-1583Research output: Contribution to journal › Journal article › Research › peer-review
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Efficient hyperelastic regularization for registration
Darkner, Sune, Hansen, M. S., Larsen, R. & Hansen, M. F., 2011, Image Analysis: 17th Scandinavian Conference, SCIA 2011, Ystad, Sweden, May 2011. Proceedings. Heyden, A. & Kahl, F. (eds.). Springer, p. 295-305 11 p. (Lecture notes in computer science, Vol. 6688).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Locally Orderless Registration
Darkner, Sune & Sporring, Jon, 2012, arxiv.org, 14 p.Research output: Working paper › Preprint › Research
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Locally orderless registration code: fast normalized mutual information and P-Norm for MATLAB
Darkner, Sune & Sporring, Jon, 2012Research output: Non-textual form › Computer programme › Research
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FDG-PET template MNI152 1mm
Darkner, Sune, 2013Research output: Non-textual form › Dataset › Research
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OpenJaw Dataset
Gholamalizadeh, T., Darkner, Sune, Søndergaard, P. & Erleben, Kenny, 2021Research output: Non-textual form › Dataset › Research
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A multi-patient analysis of the center of rotation trajectories using finite element models of the human mandible
Gholamalizadeh, T., Darkner, Sune, Søndergaard, P. L. & Erleben, Kenny, 2021, In: PLoS ONE. 16, 11 November, 16 p., e0259794.Research output: Contribution to journal › Journal article › Research › peer-review
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Mandibular Teeth Movement Variations in Tipping Scenario: A Finite Element Study on Several Patients
Gholamalizadeh, T., Darkner, Sune, Cattaneo, P. M., Søndergaard, P. & Erleben, Kenny, 2020. 10 p.Research output: Contribution to conference › Paper › Research
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Open-Full-Jaw: An open-access dataset and pipeline for finite element models of human jaw
Gholamalizadeh, T., nsv780, nsv780, Ferguson, Z., Schneider, T., Panozzo, D., Darkner, Sune, Makaremi, M., Chan, F., Lempel Søndergaard, P. & Erleben, Kenny, 1 Sep 2022, In: Computer Methods and Programs in Biomedicine. 224, 17 p., 107009.Research output: Contribution to journal › Journal article › Research › peer-review
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First-in-man mesenchymal stem cells for radiation-induced xerostomia (MESRIX): study protocol for a randomized controlled trial.
Grønhøj, C., Jensen, D. H., Glovinski, P. V., mpw981, M., Jensen, A. B., Oliveri, R. S., Specht, Lena, Thomsen, C., Darkner, Sune, Kiss, K., Fischer-Nielsen, A. & von Buchwald, Christian, 2017, In: Trials. 18, 1, 10 p., 108.Research output: Contribution to journal › Journal article › Research › peer-review
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Safety and Efficacy of Mesenchymal Stem Cells for Radiation-Induced Xerostomia: A Randomized, Placebo-Controlled Phase 1/2 Trial (MESRIX)
Grønhøj, C., Jensen, D. H., Vester-Glowinski, Peter Viktor, Jensen, S. B., Bardow, A., Oliveri, R. S., Fog, L. M., Specht, Lena, Thomsen, C., Darkner, Sune, Jensen, M., Müller, V., Kiss, K., Agander, T., Andersen, E., Fischer-Nielsen, A. & von Buchwald, Christian, 1 Jul 2018, In: International Journal of Radiation Oncology, Biology, Physics. 101, 3, p. 581-592 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Deterministic Group Tractography with Local Uncertainty Quantification
Holm, Andreas Nugaard, Feragen, A., Dela Haije, T. & Darkner, Sune, 2019, Computational Diffusion: International MICCAI Workshop, Granada,. Bonet-Carne, E., Grussu, F., Ning, L., Sepehrband, F. & Tax, C. M. W. (eds.). 226249 ed. Springer, p. 377-386 (Mathematics and Visualization).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Data Driven Inverse Kinematics of Soft Robots using Local Models
Holsten, F., Engell-norregard, M. P., Darkner, Sune & Erleben, Kenny, 2019, 2019 International Conference on Robotics and Automation (ICRA). IEEE, p. 6251-6257Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Information-Theoretic Registration with Explicit Reorientation of Diffusion-Weighted Images
Jensen, H. G., Lauze, Francois Bernard & Darkner, Sune, 2022, In: Journal of Mathematical Imaging and Vision. 64, p. 1-16Research output: Contribution to journal › Journal article › Research › peer-review
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Density-based non-rigid registration of diffusion-weighted images
Jensen, H. G., Lauze, Francois Bernard, Nielsen, Mads & Darkner, Sune, Apr 2017.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
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Multimodal brain extraction from structural MRI using co-registered FDG-PET
Jensen, H. G., Federspiel, F. V. K., Ptito, Maurice, Nielsen, Mads, Gjedde, Albert, Keller, S. H., Law, Ian, Kupers, Ron & Darkner, Sune, 2015. 12 p.Research output: Contribution to conference › Paper › Research
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Locally orderless registration for diffusion weighted images
Jensen, H. G., Lauze, Francois Bernard, Nielsen, Mads & Darkner, Sune, 2015, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015: 18th international conference, Munich, Germany, October 5-9, 2015, Proceedings, Part II. Navab, N., Hornegger, J., Wells, W. M. & Frangi, A. F. (eds.). Springer, p. 305-312 8 p. (Lecture notes in computer science, Vol. 9350).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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An Automatic DWI/FLAIR Mismatch Assessment of Stroke Patients
Johansen, Jacob, Offersen, C. M., Carlsen, Jonathan Frederik, Ingala, S., Hansen, Adam Espe, Nielsen, Michael Bachmann, Darkner, Sune & Pai, A., 2024, In: Diagnostics. 14, 1, 12 p., 69.Research output: Contribution to journal › Journal article › Research › peer-review
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Finding significantly connected voxels based on histograms of connection strengths
Kasenburg, N., Pedersen, M. V. & Darkner, Sune, 2016, Medical Imaging 2016: Image Processing. Styner, M. A. & Angelini, E. D. (eds.). SPIE - International Society for Optical Engineering, 7 p. 978431. (Progress in Biomedical Optics and Imaging; No. 39, Vol. 17).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Structural parcellation of the thalamus using shortest-path tractography
Kasenburg, N., Darkner, Sune, Hahn, U., Liptrot, M. G. & Feragen, A., 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI). IEEE, p. 559-563 5 p. 7493330Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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3D analysis of synaptic vesicle density and distribution after acute foot-shock stress by using serial section transmission electron microscopy
Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R., Wegener, G., Popoli, M. & Sporring, Jon, 2017, In: Journal of Microscopy. 265, 1, p. 101–110 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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3D estimation of synaptic vesicle distributions in serial section transmission electron microscopy
Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R., Wegener, G., Popoli, M. & Sporring, Jon, 2017, In: Journal of Microscopy. 265, 1, p. 101–110 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Automatic correction of dental artifacts in PET/MRI
Ladefoged, C. N., Andersen, F. L., Keller, S., Beyer, T., Law, I., Højgaard, Liselotte, Darkner, Sune & Lauze, Francois Bernard, 2015, In: SPIE Journal of Medical Imaging. 2, 2, 13 p., 024009.Research output: Contribution to journal › Journal article › Research › peer-review
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The added effect of artificial intelligence on physicians’ performance in detecting thoracic pathologies on CT and chest X-ray: A systematic review
Li, D., Pehrson, Lea Marie, Lauridsen, C. A., Tøttrup, L., Fraccaro, M., Elliott, Desmond, Zajac, Hubert Dariusz, Darkner, Sune, Carlsen, Jonathan Frederik & Nielsen, Michael Bachmann, 2021, In: Diagnostics. 11, 12, 17 p., 2206.Research output: Contribution to journal › Review › Research › peer-review
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Performance and Agreement When Annotating Chest X-ray Text Reports - A Preliminary Step in the Development of a Deep Learning-Based Prioritization and Detection System
Li, D., Pehrson, Lea Marie, Bonnevie, R., Fraccaro, M., Thrane, J., Tøttrup, L., Lauridsen, C. A., Balaganeshan, Sedrah Butt, Jankovic, J., Andersen, T. T., Mayar, A., Hansen, Kristoffer Lindskov, Carlsen, Jonathan Frederik, Darkner, Sune & Nielsen, Michael Bachmann, 2023, In: Diagnostics. 13, 6, 24 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Inter- and Intra-Observer Agreement When Using a Diagnostic Labeling Scheme for Annotating Findings on Chest X-rays—An Early Step in the Development of a Deep Learning-Based Decision Support System
Li, D., Pehrson, Lea Marie, Tøttrup, L., Fraccaro, M., Bonnevie, R., Thrane, J., Sørensen, P. J., Rykkje, A., Andersen, T. T., Steglich-Arnholm, H., Stærk, D. M. R., Borgwardt, L., Hansen, Kristoffer Lindskov, Darkner, Sune, Carlsen, Jonathan Frederik & Nielsen, Michael Bachmann, 2022, In: Diagnostics. 12, 12, 3112.Research output: Contribution to journal › Journal article › Research › peer-review
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Evaluation of WBAA with registration-based cube propagation for brain atrophy quantification
Lillholm, Martin, Pai, A. S. U., Sørensen, L., Nielsen, Mads, Sporring, Jon, Darkner, Sune & Dam, E., 2013. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
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Streamlet Tractography
Liptrot, M. G., Darkner, Sune, Feragen, A. & Lauze, Francois Bernard, Apr 2017.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
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Bundle Geodesic Convolutional Neural Network for DWI Segmentation from Single Scan Learning
Liu, Renfei, Lauze, Francois Bernard, Erleben, Kenny & Darkner, Sune, 2021, Computational Diffusion MRI - 12th International Workshop, CDMRI 2021, Held in Conjunction with MICCAI 2021, Proceedings. Cetin-Karayumak, S., Christiaens, D., Figini, M., Guevara, P., Gyori, N., Nath, V. & Pieciak, T. (eds.). Springer, p. 121-132 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 13006 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Bundle geodesic convolutional neural network for diffusion-weighted imaging segmentation
Liu, Renfei, Lauze, Francois Bernard, Erleben, Kenny, Berg, Rune W. & Darkner, Sune, 2022, In: Journal of Medical Imaging. 9, 6, 14 p., 064002.Research output: Contribution to journal › Journal article › Research › peer-review
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cRedAnno+: Annotation Exploitation In Self-Explanatory Lung Nodule Diagnosis
Lu, J., Yin, C., Erleben, Kenny, Nielsen, Michael Bachmann & Darkner, Sune, 2023, 2023 IEEE International Symposium on Biomedical Imaging, ISBI 2023. IEEE Computer Society Press, (Proceedings - International Symposium on Biomedical Imaging, Vol. 2023-April).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Reducing Annotation Need in Self-explanatory Models for Lung Nodule Diagnosis
Lu, J., Yin, C., Krause, Oswin, Erleben, Kenny, Nielsen, Michael Bachmann & Darkner, Sune, 2022, Interpretability of Machine Intelligence in Medical Image Computing. Reyes, M., Abreu, PH. & Cardoso, J. (eds.). Springer, p. 33-43 (Lecture Notes in Computer Science, Vol. 13611).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Pseudo-Label Guided Image Synthesis for Semi-Supervised COVID-19 Pneumonia Infection Segmentation
Lyu, F., Ye, M., Carlsen, J. F., Erleben, Kenny, Darkner, Sune & Yuen, P. C., 2023, In: IEEE Transactions on Medical Imaging. 42, 3, p. 797-809Research output: Contribution to journal › Journal article › Research › peer-review
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Fast Vortex Particle Method for Fluid-Character Interaction
Meldgaard, A., Erleben, Kenny & Darkner, Sune, 2022, In: Proceedings - Graphics Interface. 2022-May, 10.Research output: Contribution to journal › Conference article › Research › peer-review
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Fast Vortex Particle Method for Fluid-Character Interaction
Meldgaard, A., Darkner, Sune & Erleben, Kenny, 2022, In: OpenReview.net. 2022, 7 p.Research output: Contribution to journal › Conference article › Research
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Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation
Michalkiewicz, M. D., Pai, A. S. U., Leung, K. K., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L., Sporring, Jon & Nielsen, Mads, 2016, Medical imaging 2016: Image processing. Styner, M. A. & Angelini, E. D. (eds.). SPIE - International Society for Optical Engineering, 6 p. 978406. (Progress in Biomedical Optics and Imaging).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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A Direct Geometry Processing Cartilage Generation Method Using Segmented Bone Models from Datasets with Poor Cartilage Visibility
nsv780, nsv780, Nielsen, M. K., Tascon Vidarte, J. D., Darkner, Sune & Erleben, Kenny, 2022, Computational Biomechanics for Medicine: Towards Translation and Better Patient Outcomes. Springer, p. 155.169Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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LibHip: An open-access hip joint model repository suitable for finite element method simulation
nsv780, nsv780, Gholamalizadeh, T., Ferguson, Z., Schneider, T., Nielsen, Michael Bachmann, Panozzo, D., Darkner, Sune & Erleben, Kenny, 2022, In: Computer Methods and Programs in Biomedicine. 226, 14 p., 107140.Research output: Contribution to journal › Journal article › Research › peer-review
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Automatic measurement of wrist synovitis from contrast-enhanced MRI: a registration-centered approach
Mysling, P., Darkner, Sune, Sporring, Jon, Dam, E. & Lillholm, Martin, 2013, Medical Imaging 2013: Image Processing. Ourselin, S. & Haynor, D. R. (eds.). SPIE - International Society for Optical Engineering, 6 p. 86692U. (Progress in Biomedical Optics and Imaging; No. 36, Vol. 14).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Deep Learning-Assisted Localisation of Nanoparticles in synthetically generated two-photon microscopy images
Netterstrøm, R., Kutuzov, Nikolay, Darkner, Sune, Pallesen, M. J., Lauritzen, Martin, Erleben, Kenny & Lauze, Francois Bernard, 2023, arXiv.org, 1 p.Research output: Working paper › Preprint › Research
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The cartilage bone junction and its implications for deep canal hearing instrument fittings
Nielsen, C. & Darkner, Sune, 2011, In: Hearing Journal. 64, 3, p. 35-42 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
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TopAwaRe: Topology-Aware Registration
Nielsen, R. K., Darkner, Sune & Feragen, A., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer VS, p. 364-372 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 11765 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Localized cerebral atrophy acceleration during Alzheimer’s disease
Pai, A. S. U., Sørensen, L., Darkner, Sune, Lillholm, Martin, Dam, E. B., Sporring, Jon & Nielsen, Mads, 2013, In: Alzheimer's & Dementia. 9, 4, Supplement, p. P36–P37 2 p., IC-P-059.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
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White matter hypointensity growth rate correlates with rate of brain atrophy
Pai, A. S. U., Sørensen, L., Darkner, Sune, Sporring, Jon, Rostrup, E. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P414 1 p., P1-285.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
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Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel
Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Medical Imaging 2015: Image Processing. SPIE - International Society for Optical Engineering, 7 p. (Proceedings of S P I E - International Society for Optical Engineering, Vol. 9413).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Diffeomorphic image registration with automatic time-step adjustment
Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI). IEEE, p. 1085-1088 4 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Comparison of several computational pipelines for atrophy computation in longitudinal Alzheimers studies
Pai, A. S. U., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L. E. B. L., Sporring, Jon & Nielsen, Mads, 2015. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
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Evaluation of bias in brain atrophy estimation
Pai, A. S. U., Darkner, Sune, Sørensen, L., Erleben, L. L., Mysling, P., Sporring, Jon, Dam, E. & Nielsen, Mads, 2012, NIBAD '12: MICCAI 2012 Workshop on Novel Imaging Biomarkers for Alzheimer’s Disease and Related Disorders. Wang, L., Yushkevich, P. & Ourselin, S. (eds.). MICCAI , p. 198-206 9 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Localized cerebral atrophy acceleration during Alzheimer’s disease
Pai, A. S. U., Sørensen, L., Darkner, Sune, Lillholm, Martin, Dam, E. B., Sporring, Jon & Nielsen, Mads, 2013, In: Alzheimer's & Dementia. 9, 4, Supplement, p. P151 1 p., O1-10-06.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
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Hippocampal texture predicts rate of cognitive decline in mild cognitive impairment
Pai, A. S. U., Pillai, J. A., Sørensen, L., Darkner, Sune, Sommer, Stefan Horst & Nielsen, Mads, Jul 2017, In: Alzheimer's & Dementia. 13, 7, supplement, p. P1356 1 p., P4-225.Research output: Contribution to journal › Conference abstract in journal › Research
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Kernel bundle diffeomorphic image registration using stationary velocity fields and Wendland basis functions
Pai, A. S. U., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2016, In: IEEE Transactions on Medical Imaging. 35, 6, p. 1369-1380 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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White matter hypointensity growth rate correlates with rate of brain atrophy
Pai, A. S. U., Sørensen, L., Darkner, Sune, Sporring, Jon, Rostrup, E. & Nielsen, Mads, 2014, In: Alzheimer's & Dementia. 10, 4, Supplement, p. P75-P76 2 p., IC-P-131.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
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Stepwise inverse consistent Euler’s scheme for diffeomorphic image registration
Pai, A. S. U., Sommer, Stefan Horst, Darkner, Sune, Sørensen, L., Sporring, Jon & Nielsen, Mads, 2014, Biomedical Image Registration: 6th International Workshop, WBIR 2014, London, UK, July 7-8, 2014. Proceedings. Ourselin, S. & Modat, M. (eds.). Springer, p. 223-230 8 p. (Lecture notes in computer science, Vol. 8545).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Cube propagation for focal brain atrophy estimation
Pai, A. S. U., Sørensen, L., Darkner, Sune, Mysling, P., Jørgensen, D. R., Dam, E. B., Lillholm, Martin, Oh, J., Chen, G., Suhy, J., Sporring, Jon & Nielsen, Mads, 2013, 2013 IEEE 10th International Symposium on Biomedical Imaging. IEEE, p. 402-405 4 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Deformation-based atrophy computation by surface propagation and its application to Alzheimer’s disease
Pai, A. S. U., Sporring, Jon, Darkner, Sune, Dam, Erik Bjørnager, Lillholm, Martin, Jørgensen, D., Oh, J., Chen, G., Suhy, J., Sørensen, L. & Nielsen, Mads, 2016, In: SPIE Journal of Medical Imaging. 3, 1, 11 p., 014005.Research output: Contribution to journal › Journal article › Research › peer-review
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A statistical model for simultaneous template estimation, bias correction, and registration of 3D brain images
Pai, A. S. U., Sommer, Stefan Horst, Raket, L. L., Kühnel, L., Darkner, Sune, Sørensen, L. & Nielsen, Mads, 2017, Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging: MICCAI 2016 International Workshops, MCV and BAMBI, Athens, Greece, October 21, 2016, Revised Selected Papers. Müller, H., Kelm, B. M., Arbel, T., Cai, W., Cardoso, M. J., Langs, G., Menze, B., Metaxas, D., Montillo, A., Wells, W. M., Zhang, S., Chung, A. C. S., Jenkinson, M. & Ribbens, A. (eds.). Springer, p. 151-159 9 p. (Lecture notes in computer science, Vol. 10081).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Adaptive time-stepping in dieomorphic image registration with bounded inverse consistency error
Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015) . INRIA, p. 35-47Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Adaptive time-stepping in diffeomorphic image registration with bounded inverse consistency error
Pai, A. S. U., Klein, S., Sommer, Stefan Horst, Sørensen, L. E. B. L., Darkner, Sune, Sporring, Jon & Nielsen, Mads, 2015, The 18th International Conference on Medical Image Computing and Computer Assisted Intervention: proceedings. Technische Universität München , p. 35-47 13 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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U-Sleep: resilient high-frequency sleep staging
Perslev, Mathias, Darkner, Sune, Kempfner, L., Nikolic, M., Jennum, Poul & Igel, Christian, 15 Apr 2021, In: npj Digital Medicine. 4, 1, 12 p., 72.Research output: Contribution to journal › Journal article › Research › peer-review
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U-Time: A Fully Convolutional Network for Time Series Segmentation Applied to Sleep Staging
Perslev, Mathias, Hejselbak Jensen, M., Darkner, Sune, Jørgen Jennum, P. & Igel, Christian, 1 Oct 2019, Advances in Neural Information Processing Systems 32 (NIPS 2019). NIPS Proceedings, Vol. 32. p. 4415-4426Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Automatic FDG-PET-based tumor and metastatic lymph node segmentation in cervical cancer
Rodríguez Arbonès, D., Jensen, H. G., Loft, A., af Rosenschöld, P. M., Hansen, A. E., Igel, Christian & Darkner, Sune, 2014, Medical Imaging 2014: Image Processing. Ourselin, S. & Styner, M. A. (eds.). SPIE - International Society for Optical Engineering, 8 p. 903441. (Progress in Biomedical Optics and Imaging; No. 35, Vol. 15).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Global Position Prediction for Interactive Motion Capture
Schreiner, Paul, Perepichka, M., Lewis, H., Darkner, Sune, Kry, P. G., Erleben, Kenny & Zordan, V. B., 2021, In: Proceedings of the ACM on Computer Graphics and Interactive Techniques. 4, 3, p. 1-16 3479985.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Brain Segmentation in Rodent MR-Images Using Convolutional Neural Networks
Sigurdsson, B., Darkner, Sune, Sommer, Stefan Horst, Mortensen, K. N., Sanggaard, S., Kostrikov, S. & Nedergaard, Maiken, 2018.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
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A framework for voxel-based assessment of biological effect after proton radiotherapy in pediatric brain cancer patients using multi-modal imaging
Skaarup, M., Lundemann, M. J., Darkner, Sune, Jorgensen, M., Marner, Lisbeth, Mirkovic, D., Grosshans, D., Peeler, C., Mohan, R., Vogelius, Ivan R. & Appelt, A., 10 Jun 2021, In: Medical Physics. 48, 7, 12 p., 4110-4121.Research output: Contribution to journal › Journal article › Research › peer-review
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RootPainter3D: Interactive-machine-learning enables rapid and accurate contouring for radiotherapy
Smith, Abraham George, Petersen, Jens, Terrones-Campos, C., Berthelsen, A. K., Forbes, N. J., Darkner, Sune, Specht, Lena & Vogelius, I. R., 2022, In: Medical Physics. 49, 1, p. 461-473Research output: Contribution to journal › Journal article › Research › peer-review
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Higher-order momentum distributions and locally affine LDDMM registration
Sommer, Stefan Horst, Nielsen, Mads, Darkner, Sune & Pennec, X., 2013, In: S I A M Journal on Imaging Sciences. 6, 1, p. 341-367 27 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An algebra for local histograms
Sporring, Jon & Darkner, Sune, 2022, In: Frontiers in Computer Science. 4, p. 1-9 939563.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reconstructing Binary Signals from Local Histograms
Sporring, Jon & Darkner, Sune, 21 Mar 2022, In: Entropy. 24, 3, p. 1-11 433.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Jacobians for Lebesgue registration for a range of similarity measures
Sporring, Jon & Darkner, Sune, 2011, Department of Computer Science, University of Copenhagen. 8 p. (Koebenhavns Universitet. Datalogisk Institut. Rapport; No. 04/2011).Research output: Book/Report › Report › Research
- Published
Estimating the thickness of ultra thin sections for electron microscopy by image statistics
Sporring, Jon, Khanmohammadi, M., Darkner, Sune, Nava, N., Nyengaard, J. R. & Jensen, E. B. V., 2014, 2014 IEEE International Symposium on Biomedical Imaging. IEEE, p. 157-160 4 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
The minimal energetic requirement of sustained awareness after brain injury
Stender, J., Mortensen, K. N., Thibaut, A., Darkner, Sune, Laureys, S., Gjedde, Albert & Kupers, Ron, 6 Jun 2016, In: Current Biology. 26, 11, p. 1494-1499 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Restoring drifted electron microscope volumes using synaptic vesicles at sub-pixel accuracy
Stephensen, Hans Jacob Teglbjærg, Darkner, Sune & Sporring, Jon, 2020, In: Communications Biology. 3, 1, 7 p., ´81.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Hippocampal texture provides volume-independent information for Alzheimer's disease diagnosis
Sørensen, L., Pai, A. S. U., Darkner, Sune, Suhy, J., Oh, J., Chen, G., Igel, Christian & Nielsen, M., 2012, In: Alzheimer's & Dementia. 8, 4, Supplement, p. P162–P163 2 p.Research output: Contribution to journal › Conference abstract in journal › Research
- Published
Hippocampal texture provides volume independent information for Alzheimer's diagnosis
Sørensen, L., Pai, A. S. U., Darkner, Sune, Suhy, J., Oh, J., Chen, G., Igel, Christian & Nielsen, Mads, 2012, In: Alzheimer's & Dementia. 8, 4, Supplement, p. 15 1 p., IC-P-013.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
Hippocampal texture predicts one-year hippocampal atrophy in mild cognitively impaired subjects
Sørensen, L., Pai, A. S. U., Mysling, P., Darkner, Sune, Chen, G., Oh, J., Suhy, J., Igel, Christian & Nielsen, Mads, 2013. 1 p.Research output: Contribution to conference › Poster › Research › peer-review
- Published
Accuracy and consistency of intensity-based deformable image registration in 4DCT for tumor motion estimation in liver radiotherapy planning
Tascon-Vidarte, J. D., Stick, L. B., Josipovic, Mirjana, Risum, S., Jomier, J., Erleben, Kenny, Vogelius, Ivan R. & Darkner, Sune, Jul 2022, In: PLoS ONE. 17, 7 July, p. 1-15 e0271064.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cine-MRI Simulation to Evaluate Tumor Tracking
Tascón-Vidarte, J. D., Wahlstedt, I., Jomier, J., Erleben, Kenny, Vogelius, Ivan R. & Darkner, Sune, 2021, Simulation and Synthesis in Medical Imaging - 6th International Workshop, SASHIMI 2021, Held in Conjunction with MICCAI 2021, Proceedings. Svoboda, D., Burgos, N., Wolterink, J. M. & Zhao, C. (eds.). Springer, p. 131-141 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 12965 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Conforming contact manifolds for multibody simulations
Visseq, V., Bonde, U., Erleben, Kenny & Darkner, Sune, 2014. 2 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Auto-segmentation of Hip Joints Using MultiPlanar UNet with Transfer Learning
Xu, Peidi, nsv780, nsv780, Gholamalizadeh, T., Nielsen, Michael Bachmann, Erleben, Kenny & Darkner, Sune, 2022, Medical Image Learning with Limited and Noisy Data: First International Workshop, MILLanD 2022 Held in Conjunction with MICCAI 2022 Singapore, September 22, 2022 Proceedings. Zamzmi, G., Antani, S., Rajaraman, S., Xue, Z., Bagci, U. & Linguraru, M. G. (eds.). Springer Science and Business Media Deutschland GmbH, p. 153-162 10 p. (Medical Image Learning with Limited and Noisy Data, Vol. 13559).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Deep-learning-based segmentation of individual tooth and bone with periodontal ligament interface details for simulation purposes
Xu, Peidi, Gholamalizadeh, T., nsv780, nsv780, Darkner, Sune & Erleben, Kenny, 2023, In: IEEE Access. 11, p. 102460-102470Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extremely Weakly-Supervised Blood Vessel Segmentation with Physiologically Based Synthesis and Domain Adaptation
Xu, Peidi, Lee, B., Sosnovtseva, Olga, Sorensen, Charlotte Mehlin, Erleben, Kenny & Darkner, Sune, 2023, Medical Image Learning with Limited and Noisy Data - 2nd International Workshop, MILLanD 2023, Held in Conjunction with MICCAI 2023, Proceedings. Xue, Z., Antani, S., Zamzmi, G., Yang, F., Rajaraman, S., Liang, Z., Huang, S. X. & Linguraru, M. G. (eds.). Springer, p. 191-201 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 14307 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
A hybrid approach to full-scale reconstruction of renal arterial network
Xu, Peidi, von Holstein-Rathlou, Niels-Henrik, Søgaard, S. B., Gundlach, C., Sorensen, Charlotte Mehlin, Erleben, Kenny, Sosnovtseva, Olga & Darkner, Sune, 9 May 2023, In: Scientific Reports. 13, 1, 15 p., 7569.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 18038443
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Locally orderless registration
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Jet-based local image descriptors
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FDG-PET template MNI152 1mm
Research output: Non-textual form › Dataset › Research
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